[ { "collection": "header", "description": "TetR homologs: PhlF, SrpR, BM3R1, HlyIIR, BetI, AmtR, AmeR, QacR, IcaRA, LitR, PsrA, LmrA", "version": "Eco1C1G1T1", "date": "Thu Dec 24 00:56:10 EST 2015", "author": [ "Bryan Der" ], "organism": "Escherichia coli NEB 10-beta", "genome": "NEB 10 \u2206(ara-leu) 7697 araD139 fhuA \u2206lacX74 galK16 galE15 e14- \u03c680dlacZ\u2206M15 recA1 relA1 endA1 nupG rpsL (StrR) rph spoT1 \u2206(mrr-hsdRMS-mcrBC)", "media": "M9 minimal media composed of M9 media salts (6.78 g/L Na2HPO4, 3 g/L KH2PO4, 1 g/L NH4Cl, 0.5 g/L NaCl, 0.34 g/L thiamine hydrochloride, 0.4% D-glucose, 0.2% Casamino acids, 2 mM MgSO4, and 0.1 mM CaCl2; kanamycin (50 ug/ml), spectinomycin (50 ug/ml)", "temperature": "37", "growth": "Inoculation: Individual colonies into M9 media, 16 hours overnight in plate shaker. Dilution: Next day, cells dilute ~200-fold into M9 media with antibiotics, growth for 3 hours. Induction: Cells diluted ~650-fold into M9 media with antibiotics. Growth: shaking incubator for 5 hours. Arrest protein production: PBS and 2mg/ml kanamycin. Measurement: flow cytometry, data processing for RPU normalization." }, { "collection": "measurement_std", "signal_carrier_units": "RPU", "normalization_instructions": "The following equation converts the median YFP fluorescence to RPU. RPU = (YFP \u2013 YFP0)/(YFPRPU \u2013 YFP0), where YFP is the median fluorescence of the cells of interest, YFP0 is the median autofluorescence, and YFPRPU is the median fluorescence of the cells containing the measurement standard plasmid", "plasmid_description": "p15A plasmid backbone with kanamycin resistance and a YFP expression cassette. Upstream isulation by terminator L3S3P21\nand a 5\u2019-promoter spacer. Promoter BBa_J23101, ribozyme RiboJ, RBS BBa_B0064 drives constitutive YFP expression, with transcriptional termination by L3S3P21.", "plasmid_sequence": [ "LOCUS pAN801star__LacI 2853 bp ds-DNA circular 27-MAR-2015", "SOURCE ", " ORGANISM ", "COMMENT ", "COMMENT ", "COMMENT ApEinfo:methylated:1", "FEATURES Location/Qualifiers", " misc_feature 160..879", " /label=YFP 3snp", " /ApEinfo_fwdcolor=#ffff00", " /ApEinfo_revcolor=#ffff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature join(61..64,66..133)", " /label=RiboJ spacer", " /ApEinfo_fwdcolor=#808040", " /ApEinfo_revcolor=#808040", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 59..133", " /label=RiboJ", " /ApEinfo_fwdcolor=#ffff80", " /ApEinfo_revcolor=#ffff80", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(214..243)", " /label=AAKN 37 primer binding site", " /ApEinfo_fwdcolor=#804040", " /ApEinfo_revcolor=#804040", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 134..139", " /label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 154..159", " /label=SCAR(1)", " /ApEinfo_label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 142..153", " /label=B0064", " /ApEinfo_fwdcolor=#ff8040", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 134..141", " /label=SCAR(2)", " /ApEinfo_label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " rep_origin complement(1251..1251)", " /vntifkey=\"33\"", " /label=origin", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " rep_origin 978..1813", " /vntifkey=\"33\"", " /label=more\\stringent\\p15A", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " CDS complement(1885..2700)", " /vntifkey=\"4\"", " /label=Kanamycin\\phosphotransferase", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 880..940", " /label=terminator (L3S2P21)", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(988..1015)", " /label=pMJS02 seq R v2", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=cyan", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 2801..2853", " /label=L3S3P21", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=#ff0000", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 20..54", " /label=J23101", " /ApEinfo_fwdcolor=#00ff00", " /ApEinfo_revcolor=#00ff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 20..39", " /label=spacer:J23101", " /ApEinfo_fwdcolor=#ff8040", " /ApEinfo_revcolor=#804040", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(29..48)", " /label=spacer:A23001-2", " /ApEinfo_fwdcolor=#800000", " /ApEinfo_revcolor=#ff8000", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 5..19", " /label=pre-J23101 random DNA", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=cyan", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", "ORIGIN", " 1 gcttGATAAG TCCCTAACTT TTACAGCTAG CTCAGTCCTA GGTATTATGC TAGCCTGAAG", " 61 CTGTCACCGG ATGTGCTTTC CGGTCTGATG AGTCCGTGAG GACGAAACAG CCTCTACAAA", " 121 TAATTTTGTT TAATACTAGA GAAAGAGGGG AAATACTAGA TGGTGAGCAA GGGCGAGGAG", " 181 CTGTTCACCG GGGTGGTGCC CATCCTGGTC GAGCTGGACG GCGACGTAAA CGGCCACAAG", " 241 TTCAGCGTGT CCGGCGAGGG CGAGGGCGAT GCCACCTACG GCAAGCTGAC CCTGAAGTTC", " 301 ATCTGCACCA CAGGCAAGCT GCCCGTGCCC TGGCCCACCC TCGTGACCAC CTTCGGCTAC", " 361 GGCCTGCAAT GCTTCGCCCG CTACCCCGAC CACATGAAGC TGCACGACTT CTTCAAGTCC", " 421 GCCATGCCCG AAGGCTACGT CCAGGAGCGC ACCATCTTCT TCAAGGACGA CGGCAACTAC", " 481 AAGACCCGCG CCGAGGTGAA GTTCGAGGGC GACACCCTGG TGAACCGCAT CGAGCTGAAG", " 541 GGCATCGACT TCAAGGAGGA CGGCAACATC CTGGGGCACA AGCTGGAGTA CAACTACAAC", " 601 AGCCACAACG TCTATATCAT GGCCGACAAG CAGAAGAACG GCATCAAGGT GAACTTCAAG", " 661 ATCCGCCACA ACATCGAGGA CGGCAGCGTG CAGCTCGCCG ACCACTACCA GCAGAACACC", " 721 CCAATCGGCG ACGGCCCCGT GCTGCTGCCC GACAACCACT ACCTTAGCTA CCAGTCCGCC", " 781 CTGAGCAAAG ACCCCAACGA GAAGCGCGAT CACATGGTCC TGCTGGAGTT CGTGACCGCC", " 841 GCCGGGATCA CTCTCGGCAT GGACGAGCTG TACAAGTAAC TCGGTACCAA ATTCCAGAAA", " 901 AGAGGCCTCC CGAAAGGGGG GCCTTTTTTC GTTTTGGTCC AGGTGCTTCC TCGCTCACTG", " 961 ACTCGCTGCA CGAGGCAGAC CTCAGCGCTA GCGGAGTGTA TACTGGCTTA CTATGTTGGC", " 1021 ACTGATGAGG GTGTCAGTGA AGTGCTTCAT GTGGCAGGAG AAAAAAGGCT GCACCGGTGC", " 1081 GTCAGCAGAA TATGTGATAC AGGATATATT CCGCTTCCTC GCTCACTGAC TCGCTACGCT", " 1141 CGGTCGTTCG ACTGCGGCGA GCGGAAATGG CTTACGAACG GGGCGGAGAT TTCCTGGAAG", " 1201 ATGCCAGGAA GATACTTAAC AGGGAAGTGA GAGGGCCGCG GCAAAGCCGT TTTTCCATAG", " 1261 GCTCCGCCCC CCTGACAAGC ATCACGAAAT CTGACGCTCA AATCAGTGGT GGCGAAACCC", " 1321 GACAGGACTA TAAAGATACC AGGCGTTTCC CCTGGCGGCT CCCTCGTGCG CTCTCCTGTT", " 1381 CCTGCCTTTC GGTTTACCGG TGTCATTCCG CTGTTATGGC CGCGTTTGTC TCATTCCACG", " 1441 CCTGACACTC AGTTCCGGGT AGGCAGTTCG CTCCAAGCTG GACTGTATGC ACGAACCCCC", " 1501 CGTTCAGTCC GACCGCTGCG CCTTATCCGG TAACTATCGT CTTGAGTCCA ACCCGGAAAG", " 1561 ACATGCAAAA GCACCACTGG CAGCAGCCAC TGGTAATTGA TTTAGAGGAG TTAGTCTTGA", " 1621 AGTCATGCGC CGGTTAAGGC TAAACTGAAA GGACAAGTTT TGGTGACTGC GCTCCTCCAA", " 1681 GCCAGTTACC TCGGTTCAAA GAGTTGGTAG CTCAGAGAAC CTTCGAAAAA CCGCCCTGCA", " 1741 AGGCGGTTTT TTCGTTTTCA GAGCAAGAGA TTACGCGCAG ACCAAAACGA TCTCAAGAAG", " 1801 ATCATCTTAT TAAGGGGTCT GACGCTCAGT GGAACGAAAA ATCAATCTAA AGTATATATG", " 1861 AGTAAACTTG GTCTGACAGT TACCTTAGAA AAACTCATCG AGCATCAAAT GAAACTGCAA", " 1921 TTTATTCATA TCAGGATTAT CAATACCATA TTTTTGAAAA AGCCGTTTCT GTAATGAAGG", " 1981 AGAAAACTCA CCGAGGCAGT TCCATAGGAT GGCAAGATCC TGGTATCGGT CTGCGATTCC", " 2041 GACTCGTCCA ACATCAATAC AACCTATTAA TTTCCCCTCG TCAAAAATAA GGTTATCAAG", " 2101 TGAGAAATCA CCATGAGTGA CGACTGAATC CGGTGAGAAT GGCAAAAGCT TATGCATTTC", " 2161 TTTCCAGACT TGTTCAACAG GCCAGCCATT ACGCTCGTCA TCAAAATCAC TCGCATCAAC", " 2221 CAAACCGTTA TTCATTCGTG ATTGCGCCTG AGCGAGACGA AATACGCGAT CGCTGTTAAA", " 2281 AGGACAATTA CAAACAGGAA TCGAATGCAA CCGGCGCAGG AACACTGCCA GCGCATCAAC", " 2341 AATATTTTCA CCTGAATCAG GATATTCTTC TAATACCTGG AATGCTGTTT TCCCGGGGAT", " 2401 CGCAGTGGTG AGTAACCATG CATCATCAGG AGTACGGATA AAATGCTTGA TGGTCGGAAG", " 2461 AGGCATAAAT TCCGTCAGCC AGTTTAGTCT GACCATCTCA TCTGTAACAT CATTGGCAAC", " 2521 GCTACCTTTG CCATGTTTCA GAAACAACTC TGGCGCATCG GGCTTCCCAT ACAATCGATA", " 2581 GATTGTCGCA CCTGATTGCC CGACATTATC GCGAGCCCAT TTATACCCAT ATAAATCAGC", " 2641 ATCCATGTTG GAATTTAATC GCGGCCTCGA GCAAGACGTT TCCCGTTGAA TATGGCTCAT", " 2701 AACACCCCTT GTATTACTGT TTATGTAAGC AGACAGTTTT ATTGTTCATG ATGATATATT", " 2761 TTTATCTTGT GCAATGTACA TCAGAGATTT TGAGACACAA CCAATTATTG AAGGCCTCCC", " 2821 TAACGGGGGG CCTTTTTTTG TTTCTGGTCT CCC ", "//" ] }, { "collection": "logic_constraints", "available_gates": [ { "type": "NOR", "max_instances": 12 }, { "type": "OUTPUT_OR", "max_instances": true } ] }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire44,b)", "NOT(0Wire45,c)", "NOR(n4,0Wire44,0Wire45)", "NOT(0Wire46,a)", "NOT(0Wire47,n4)", "NOR(y,0Wire46,0Wire47)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire94,b)", "NOR(n5,0Wire94,c)", "NOT(0Wire96,a)", "NOT(0Wire97,n5)", "NOR(y,0Wire96,0Wire97)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire128,a)", "NOT(0Wire129,b)", "NOR(y,0Wire128,0Wire129)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire176,c)", "NOR(n5,0Wire176,b)", "NOT(0Wire178,a)", "NOT(0Wire179,n5)", "NOR(y,0Wire178,0Wire179)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire210,a)", "NOT(0Wire211,c)", "NOR(y,0Wire210,0Wire211)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(0Wire291,c,b)", "NOR(n6,b,0Wire291)", "NOR(n8,c,0Wire291)", "NOR(n10,n6,n8)", "NOT(0Wire287,a)", "NOR(y,0Wire287,n10)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(n6,b,c)", "NOT(0Wire332,a)", "NOR(y,0Wire332,n6)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(n6,b,c)", "NOT(0Wire382,a)", "NOT(0Wire383,n6)", "NOR(y,0Wire382,0Wire383)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n4,b)", "NOT(n5,c)", "NOR(n6,n4,n5)", "NOR(n8,b,c)", "NOR(n10,n6,n8)", "NOT(0Wire458,a)", "NOR(y,0Wire458,n10)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire490,a)", "NOR(y,0Wire490,c)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire532,c)", "NOR(n5,0Wire532,b)", "NOT(0Wire534,a)", "NOR(y,0Wire534,n5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire566,a)", "NOR(y,0Wire566,b)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire608,b)", "NOR(n5,0Wire608,c)", "NOT(0Wire610,a)", "NOR(y,0Wire610,n5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire646,a)", "NOR(0Wire649,0Wire646,c)", "NOR(0Wire650,0Wire646,b)", "OUTPUT_OR(y,0Wire649,0Wire650)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "BUF(y,a)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire722,b)", "NOT(0Wire723,c)", "NOR(n5,0Wire722,0Wire723)", "NOT(0Wire725,n5)", "NOR(y,a,0Wire725)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire756,b)", "NOT(0Wire757,c)", "NOR(y,0Wire756,0Wire757)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(Wire0,a,c)", "NOT(Wire1,b)", "NOR(Wire2,Wire0,Wire1)", "NOT(Wire3,Wire2)", "NOR(Wire4,Wire3,a)", "NOR(Wire5,Wire3,c)", "OUTPUT_OR(y,Wire4,Wire5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(n6,a,c)", "NOT(0Wire878,b)", "NOR(y,0Wire878,n6)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(Wire0,a,b)", "NOT(Wire1,c)", "NOR(Wire2,Wire0,Wire1)", "NOT(Wire3,Wire2)", "NOR(Wire4,Wire3,a)", "NOR(Wire5,Wire3,b)", "OUTPUT_OR(y,Wire4,Wire5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(n6,a,b)", "NOT(0Wire1002,c)", "NOR(y,0Wire1002,n6)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n4,a)", "NOT(n5,b)", "NOT(n6,c)", "NOR(n7,n5,n6)", "NOT(n8,n7)", "NOR(n9,b,c)", "NOR(n11,n4,n9)", "NOT(0Wire1085,n11)", "NOR(n12,n7,0Wire1085)", "NOR(n14,a,n8)", "OUTPUT_OR(y,n12,n14)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n4,b)", "NOT(n5,c)", "NOR(n6,n4,n5)", "NOR(n8,b,c)", "NOT(0Wire1188,a)", "NOR(n10,0Wire1188,n8)", "OUTPUT_OR(y,n6,n10)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(Wire0,a,b)", "NOR(Wire1,Wire0,a)", "NOR(Wire2,b,c)", "NOR(Wire3,Wire1,Wire2)", "NOR(Wire4,a,c)", "NOR(y,Wire3,Wire4)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(Wire0,a,b)", "NOR(Wire1,Wire0,c)", "NOR(Wire2,Wire1,b)", "NOR(Wire3,Wire2,b)", "NOR(Wire4,Wire2,Wire1)", "OUTPUT_OR(y,Wire3,Wire4)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n4,a)", "NOT(n5,c)", "NOR(n6,n4,c)", "NOT(0Wire1414,b)", "NOR(n8,0Wire1414,n5)", "NOT(0Wire1417,n8)", "NOR(n9,a,0Wire1417)", "OUTPUT_OR(y,n6,n9)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n6,c)", "NOR(n7,a,c)", "NOR(n9,n6,b)", "NOR(y,n7,n9)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1529,c)", "NOR(0Wire1545,b,a)", "NOR(0Wire1530,a,0Wire1545)", "NOT(0Wire1531,0Wire1530)", "NOR(0Wire1532,0Wire1531,0Wire1529)", "NOR(0Wire1533,b,0Wire1545)", "OUTPUT_OR(y,0Wire1532,0Wire1533)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n5,b)", "NOR(n7,a,b)", "NOR(n9,n5,c)", "NOR(y,n7,n9)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1670,b)", "NOT(0Wire1671,c)", "NOR(n5,0Wire1670,0Wire1671)", "NOR(0Wire1681,a,n5)", "NOR(n7,n5,0Wire1681)", "NOR(n9,a,0Wire1681)", "OUTPUT_OR(y,n7,n9)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1720,b)", "NOT(0Wire1721,c)", "NOR(n5,0Wire1720,0Wire1721)", "OUTPUT_OR(y,a,n5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1770,b)", "NOR(n6,0Wire1770,c)", "NOT(0Wire1773,n6)", "NOR(y,a,0Wire1773)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(n4,a)", "NOT(n5,c)", "NOR(n6,n4,n5)", "NOR(n8,a,c)", "NOR(n10,n6,n8)", "NOT(0Wire1848,b)", "NOR(y,0Wire1848,n10)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1880,b)", "NOR(y,0Wire1880,c)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(0Wire1922,c)", "NOR(n5,0Wire1922,a)", "NOT(0Wire1924,b)", "NOR(y,0Wire1924,n5)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOT(Wire0,a)", "NOR(Wire1,Wire0,b)", "NOR(Wire2,a,c)", "NOR(Wire3,Wire1,Wire2)", "NOR(Wire4,b,c)", "NOR(y,Wire3,Wire4)" ], "collection": "motif_library" }, { "outputs": [ "y" ], "inputs": [ "a", "b", "c" ], "netlist": [ "NOR(Wire0,a,b)", "NOR(Wire1,Wire0,c)", "NOR(Wire2,Wire1,a)", "NOR(Wire3,Wire2,a)", 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"AmeR", "L3S3P31" ] } ], "promoter": "pAmeR" }, { "collection": "gate_parts", "gate_name": "H1_HlyIIR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ51", "H1", "HlyIIR", "ECK120033736" ] } ], "promoter": "pHlyIIR" }, { "collection": "gate_parts", "gate_name": "I1_IcaRA", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "ElvJ", "I1", "IcaRA", "ECK120016170" ] } ], "promoter": "pIcaRA" }, { "collection": "gate_parts", "gate_name": "L1_LitR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "PlmJ", "L1", "LitR", "L3S2P24" ] } ], "promoter": "pLitR" }, { "collection": "gate_parts", "gate_name": "N1_LmrA", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ64", "N1", "LmrA", "ECK120010876" ] } ], "promoter": "pLmrA" }, { "collection": "gate_parts", "gate_name": "P1_PhlF", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ53", "P1", "PhlF", "ECK120033737" ] } ], "promoter": "pPhlF" }, { "collection": "gate_parts", "gate_name": "P2_PhlF", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ53", "P2", "PhlF", "ECK120033737" ] } ], "promoter": "pPhlF" }, { "collection": "gate_parts", "gate_name": "P3_PhlF", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ53", "P3", "PhlF", "ECK120033737" ] } ], "promoter": "pPhlF" }, { "collection": "gate_parts", "gate_name": "Q1_QacR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ60", "Q1", "QacR", "ECK120010818" ] } ], "promoter": "pQacR" }, { "collection": "gate_parts", "gate_name": "Q2_QacR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ60", "Q2", "QacR", "ECK120010818" ] } ], "promoter": "pQacR" }, { "collection": "gate_parts", "gate_name": "R1_PsrA", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "ScmJ", "R1", "PsrA", "ECK120015440" ] } ], "promoter": "pPsrA" }, { "collection": "gate_parts", "gate_name": "S1_SrpR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ10", "S1", "SrpR", "ECK120019600" ] } ], "promoter": "pSrpR" }, { "collection": "gate_parts", "gate_name": "S2_SrpR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ10", "S2", "SrpR", "ECK120029600" ] } ], "promoter": "pSrpR" }, { "collection": "gate_parts", "gate_name": "S3_SrpR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ10", "S3", "SrpR", "ECK120029600" ] } ], "promoter": "pSrpR" }, { "collection": "gate_parts", "gate_name": "S4_SrpR", "expression_cassettes": [ { "maps_to_variable": "x", "cassette_parts": [ "RiboJ10", "S4", "SrpR", "ECK120029600" ] } ], "promoter": "pSrpR" }, { "collection": "PartitionProfile", "PartitionProfile": { "name": "PProfile0", "Blocks": { "Capacity_Units": [ "NOT", "NOR", "OR", "Regular" ], "Capacity": [ { "name": "capacity0", "units": [ "NOT", "NOR", "OR" ], "lower_bound": 0, "lower_bound_type": "greater_than_or_equal", "upper_bound": 10, "upper_bound_type": "less_than" }, { "name": "capacity1", "units": [ "Regular" ], "lower_bound": 0, "lower_bound_type": "greater_than_or_equal", "upper_bound": 5, "upper_bound_type": "less_than" } ], "Blocks": [ { "name" : "block0", "capacity": [ "capacity0" ], "inout_connections_capacity": [ "capacity1" ] }, { "name" : "block1", "capacity": [ "capacity0" ], "inout_connections_capacity": [ "capacity1" ] } ] }, "InterBlocks": { "Capacity_Units": [ "Regular" ], "Capacity": [ { "name": "capacity0", "units": [ "Regular" ], "lower_bound": 0, "lower_bound_type": "greater_than_or_equal", "upper_bound": 5, "upper_bound_type": "less_than" }, { "name": "capacity1", "units": [ "Regular" ], "lower_bound": 0, "lower_bound_type": "greater_than_or_equal", "upper_bound": 1, "upper_bound_type": "less_than" } ], "InterBlocks": [ { "name" : "Interblock_0_1", "source" : "block0", "destination" : "block1", "capacity": [ "capacity0" ] }, { "name" : "Interblock_1_0", "source" : "block1", "destination" : "block0", "capacity": [ "capacity1" ] } ] } } }, { "collection": "parts", "type": "backbone", "name": "backbone", "dnasequence": "CCAATTATTGAAGGCCTCCCTAACGGGGGGCCTTTTTTTGTTTCTGGTCTCCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/backbone/1" }, { "collection": "parts", "type": "promoter", "name": "pTac", "dnasequence": "AACGATCGTTGGCTGTGTTGACAATTAATCATCGGCTCGTATAATGTGTGGAATTGTGAGCGCTCACAATT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pTac/1" }, { "collection": "parts", "type": "promoter", "name": "pTet", "dnasequence": "TACTCCACCGTTGGCTTTTTTCCCTATCAGTGATAGAGATTGACATCCCTATCAGTGATAGAGATAATGAGCAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pTet/1" }, { "collection": "parts", "type": "promoter", "name": "pBAD", "dnasequence": "ACTTTTCATACTCCCGCCATTCAGAGAAGAAACCAATTGTCCATATTGCATCAGACATTGCCGTCACTGCGTCTTTTACTGGCTCTTCTCGCTAACCAAACCGGTAACCCCGCTTATTAAAAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACTTTGCTATGCCATAGCATTTTTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBAD/1" }, { "collection": "parts", "type": "promoter", "name": "pLuxStar", "dnasequence": "ATAGCTTCTTACCGGACCTGTAGGATCGTACAGGTTTACGCAAGAAAATGGTTTGTTACTTTCGAATAAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pLuxStar/1" }, { "collection": "parts", "type": "cds", "name": "YFP", "dnasequence": "ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACAGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCTTCGGCTACGGCCTGCAATGCTTCGCCCGCTACCCCGACCACATGAAGCTGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCAATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTTAGCTACCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/YFP/1" }, { "collection": "parts", "type": "cds", "name": "RFP", "dnasequence": "CTGAAGTGGTCGTGATCTGAAACTCGATCACCTGATGAGCTCAAGGCAGAGCGAAACCACCTCTACAAATAATTTTGTTTAATACTAGAGTCACACAGGAAAGTACTAGATGGCTTCCTCCGAAGACGTTATCAAAGAGTTCATGCGTTTCAAAGTTCGTATGGAAGGTTCCGTTAACGGTCACGAGTTCGAAATCGAAGGTGAAGGTGAAGGTCGTCCGTACGAAGGTACCCAGACCGCTAAACTGAAAGTTACCAAAGGTGGTCCGCTGCCGTTCGCTTGGGACATCCTGTCCCCGCAGTTCCAGTACGGTTCCAAAGCTTACGTTAAACACCCGGCTGACATCCCGGACTACCTGAAACTGTCCTTCCCGGAAGGTTTCAAATGGGAACGTGTTATGAACTTCGAAGACGGTGGTGTTGTTACCGTTACCCAGGACTCCTCCCTGCAAGACGGTGAGTTCATCTACAAAGTTAAACTGCGTGGTACCAACTTCCCGTCCGACGGTCCGGTTATGCAGAAAAAAACCATGGGTTGGGAAGCTTCCACCGAACGTATGTACCCGGAAGACGGTGCTCTGAAAGGTGAAATCAAAATGCGTCTGAAACTGAAAGACGGTGGTCACTACGACGCTGAAGTTAAAACCACCTACATGGCTAAAAAACCGGTTCAGCTGCCGGGTGCTTACAAAACCGACATCAAACTGGACATCACCTCCCACAACGAAGACTACACCATCGTTGAACAGTACGAACGTGCTGAAGGTCGTCACTCCACCGGTGCTTAATAACAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RFP/1" }, { "collection": "parts", "type": "cds", "name": "BFP", "dnasequence": "CTGAAGTTCCAGTCGAGACCTGAAGTGGGTTTCCTGATGAGGCTGTGGAGAGAGCGAAAGCTTTACTCCCGCACAAGCCGAAACTGGAACCTCTACAAATAATTTTGTTTAAGAGTCACACAGGAAAGTACTAGATGAGCGAGCTGATTAAGGAGAACATGCACATGAAGCTGTACATGGAGGGCACCGTGGACAACCATCACTTCAAGTGCACATCCGAGGGCGAAGGCAAGCCCTACGAGGGCACCCAGACCATGAGAATCAAGGTGGTCGAGGGCGGCCCTCTCCCCTTCGCCTTCGACATCCTGGCTACTAGCTTCCTCTACGGCAGCAAGACCTTCATCAACCACACCCAGGGCATCCCCGACTTCTTCAAGCAGTCCTTCCCTGAGGGCTTCACATGGGAGAGAGTCACCACATACGAAGATGGGGGCGTGCTGACCGCTACCCAGGACACCAGCCTCCAGGACGGCTGCCTCATCTACAACGTCAAGATCAGAGGGGTGAACTTCACATCCAACGGCCCTGTGATGCAGAAGAAAACACTCGGCTGGGAGGCCTTCACCGAGACGCTGTACCCCGCTGACGGCGGCCTGGAAGGCAGAAACGACATGGCCCTGAAGCTCGTGGGCGGGAGCCATCTGATCGCAAACATCAAGACCACATATAGATCCAAGAAACCCGCTAAGAACCTCAAGATGCCTGGCGTCTACTATGTGGACTACAGACTGGAAAGAATCAAGGAGGCCAACAACGAGACCTACGTCGAGCAGCACGAGGTGGCAGTGGCCAGATACTGCGACCTCCCTAGCAAACTGGGGCACTAACCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTCACACTGGCTCACCTTCGGGTGGGCCTTTCTGCGTTTATA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BFP/1" }, { "collection": "parts", "type": "cds", "name": "sigmaK1FR", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGACGCGCTTGAACCTGAGGTTCCTCGGTTCGTTCAACCTCCAGCCGACCGTCAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaT3", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGAAGCGCCTGGACATGATTTTCTTGGGTCAATTTCGCTTGCAACCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaT7", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGAGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGACGCGCTTGAACCTGATGTTCCTCGGTCAGTTCCGCTTACAGCCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaCGG", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTAAAACGCGCGTGCATATTATGTTCCTCGGTCAGTTCGAAATGCAGCCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACGCAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "promoter", "name": "pCONST", "dnasequence": "GATAAGTCCCTAACTTTTACAGCTAGCTCAGTCCTAGGTATTATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ", "dnasequence": "AGCTGTCACCGGATGTGCTTTCCGGTCTGATGAGTCCGTGAGGACGAAACAGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ/1" }, { "collection": "parts", "type": "rbs", "name": "BBa_B0064_rbs", "dnasequence": "AAAGAGGGGAAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BBa_B0064_rbs/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P21_terminator", "dnasequence": "CTCGGTACCAAATTCCAGAAAAGAGGCCTCCCGAAAGGGGGGCCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P21_terminator/1" }, { "collection": "parts", "type": "ribozyme", "name": "BydvJ", "dnasequence": "CTGAagGGTGTCTCAAGGTGCGTACCTTGACTGATGAGTCCGAAAGGACGAAACACCcctctacaaataattttgtttaa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BydvJ/1" }, { "collection": "parts", "type": "rbs", "name": "A1", "dnasequence": "AATGTTCCCTAATAATCAGCAAAGAGGTTACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/A1/1" }, { "collection": "parts", "type": "cds", "name": "AmtR", "dnasequence": "ATGGCAGGCGCAGTTGGTCGTCCGCGTCGTAGTGCACCGCGTCGTGCAGGTAAAAATCCGCGTGAAGAAATTCTGGATGCAAGCGCAGAACTGTTTACCCGTCAGGGTTTTGCAACCACCAGTACCCATCAGATTGCAGATGCAGTTGGTATTCGTCAGGCAAGCCTGTATTATCATTTTCCGAGCAAAACCGAAATCTTTCTGACCCTGCTGAAAAGCACCGTTGAACCGAGCACCGTTCTGGCAGAAGATCTGAGCACCCTGGATGCAGGTCCGGAAATGCGTCTGTGGGCAATTGTTGCAAGCGAAGTTCGTCTGCTGCTGAGCACCAAATGGAATGTTGGTCGTCTGTATCAGCTGCCGATTGTTGGTAGCGAAGAATTTGCAGAATATCATAGCCAGCGTGAAGCACTGACCAATGTTTTTCGTGATCTGGCAACCGAAATTGTTGGTGATGATCCGCGTGCAGAACTGCCGTTTCATATTACCATGAGCGTTATTGAAATGCGTCGCAATGATGGTAAAATTCCGAGTCCGCTGAGCGCAGATAGCCTGCCGGAAACCGCAATTATGCTGGCAGATGCAAGCCTGGCAGTTCTGGGTGCACCGCTGCCTGCAGATCGTGTTGAAAAAACCCTGGAACTGATTAAACAGGCAGATGCAAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AmtR/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P55", "dnasequence": "CTCGGTACCAAAGACGAACAATAAGACGCTGAAAAGCGTCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P55/1" }, { "collection": "parts", "type": "promoter", "name": "pAmtR", "dnasequence": "CTTGTCCAACCAAATGATTCGTTACCAATTGACAGTTTCTATCGATCTATAGATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pAmtR/1" }, { "collection": "parts", "type": "ribozyme", "name": "SarJ", "dnasequence": "CTGAGACTGTCGCCGGATGTGTATCCGACCTGACGATGGCCCAAAAGGGCCGAAACAGTCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SarJ/1" }, { "collection": "parts", "type": "rbs", "name": "B1", "dnasequence": "CTATGGACTATGTTTTAACTACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/B1/1" }, { "collection": "parts", "type": "cds", "name": "BM3R1", "dnasequence": "ATGGAAAGCACCCCGACCAAACAGAAAGCAATTTTTAGCGCAAGCCTGCTGCTGTTTGCAGAACGTGGTTTTGATGCAACCACCATGCCGATGATTGCAGAAAATGCAAAAGTTGGTGCAGGCACCATTTATCGCTATTTCAAAAACAAAGAAAGCCTGGTGAACGAACTGTTTCAGCAGCATGTTAATGAATTTCTGCAGTGTATTGAAAGCGGTCTGGCAAATGAACGTGATGGTTATCGTGATGGCTTTCATCACATTTTTGAAGGTATGGTGACCTTTACCAAAAATCATCCGCGTGCACTGGGTTTTATCAAAACCCATAGCCAGGGCACCTTTCTGACCGAAGAAAGCCGTCTGGCATATCAGAAACTGGTTGAATTTGTGTGCACCTTTTTTCGTGAAGGTCAGAAACAGGGTGTGATTCGTAATCTGCCGGAAAATGCACTGATTGCAATTCTGTTTGGCAGCTTTATGGAAGTGTATGAAATGATCGAGAACGATTATCTGAGCCTGACCGATGAACTGCTGACCGGTGTTGAAGAAAGCCTGTGGGCAGCACTGAGCCGTCAGAGCTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BM3R1/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P11", "dnasequence": "CTCGGTACCAAATTCCAGAAAAGAGACGCTTTCGAGCGTCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P11/1" }, { "collection": "parts", "type": "promoter", "name": "pBM3R1", "dnasequence": "AATCCGCGTGATAGGTCTGATTCGTTACCAATTGACGGAATGAACGTTCATTCCGATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBM3R1/1" }, { "collection": "parts", "type": "ribozyme", "name": "SarJ", "dnasequence": "CTGAGACTGTCGCCGGATGTGTATCCGACCTGACGATGGCCCAAAAGGGCCGAAACAGTCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SarJ/1" }, { "collection": "parts", "type": "rbs", "name": "B2", "dnasequence": "CTATGGACTATGTTTTTCAAAGACGAAAAACTACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/B2/1" }, { "collection": "parts", "type": "cds", "name": "BM3R1", "dnasequence": "ATGGAAAGCACCCCGACCAAACAGAAAGCAATTTTTAGCGCAAGCCTGCTGCTGTTTGCAGAACGTGGTTTTGATGCAACCACCATGCCGATGATTGCAGAAAATGCAAAAGTTGGTGCAGGCACCATTTATCGCTATTTCAAAAACAAAGAAAGCCTGGTGAACGAACTGTTTCAGCAGCATGTTAATGAATTTCTGCAGTGTATTGAAAGCGGTCTGGCAAATGAACGTGATGGTTATCGTGATGGCTTTCATCACATTTTTGAAGGTATGGTGACCTTTACCAAAAATCATCCGCGTGCACTGGGTTTTATCAAAACCCATAGCCAGGGCACCTTTCTGACCGAAGAAAGCCGTCTGGCATATCAGAAACTGGTTGAATTTGTGTGCACCTTTTTTCGTGAAGGTCAGAAACAGGGTGTGATTCGTAATCTGCCGGAAAATGCACTGATTGCAATTCTGTTTGGCAGCTTTATGGAAGTGTATGAAATGATCGAGAACGATTATCTGAGCCTGACCGATGAACTGCTGACCGGTGTTGAAGAAAGCCTGTGGGCAGCACTGAGCCGTCAGAGCTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BM3R1/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P11", "dnasequence": "CTCGGTACCAAATTCCAGAAAAGAGACGCTTTCGAGCGTCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P11/1" }, { "collection": "parts", "type": "promoter", "name": "pBM3R1", "dnasequence": "AATCCGCGTGATAGGTCTGATTCGTTACCAATTGACGGAATGAACGTTCATTCCGATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBM3R1/1" }, { "collection": "parts", "type": "ribozyme", "name": "SarJ", "dnasequence": "CTGAGACTGTCGCCGGATGTGTATCCGACCTGACGATGGCCCAAAAGGGCCGAAACAGTCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SarJ/1" }, { "collection": "parts", "type": "rbs", "name": "B3", "dnasequence": "CCAAACGAGGCCGGGAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/B3/1" }, { "collection": "parts", "type": "cds", "name": "BM3R1", "dnasequence": "ATGGAAAGCACCCCGACCAAACAGAAAGCAATTTTTAGCGCAAGCCTGCTGCTGTTTGCAGAACGTGGTTTTGATGCAACCACCATGCCGATGATTGCAGAAAATGCAAAAGTTGGTGCAGGCACCATTTATCGCTATTTCAAAAACAAAGAAAGCCTGGTGAACGAACTGTTTCAGCAGCATGTTAATGAATTTCTGCAGTGTATTGAAAGCGGTCTGGCAAATGAACGTGATGGTTATCGTGATGGCTTTCATCACATTTTTGAAGGTATGGTGACCTTTACCAAAAATCATCCGCGTGCACTGGGTTTTATCAAAACCCATAGCCAGGGCACCTTTCTGACCGAAGAAAGCCGTCTGGCATATCAGAAACTGGTTGAATTTGTGTGCACCTTTTTTCGTGAAGGTCAGAAACAGGGTGTGATTCGTAATCTGCCGGAAAATGCACTGATTGCAATTCTGTTTGGCAGCTTTATGGAAGTGTATGAAATGATCGAGAACGATTATCTGAGCCTGACCGATGAACTGCTGACCGGTGTTGAAGAAAGCCTGTGGGCAGCACTGAGCCGTCAGAGCTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BM3R1/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P11", "dnasequence": "CTCGGTACCAAATTCCAGAAAAGAGACGCTTTCGAGCGTCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P11/1" }, { "collection": "parts", "type": "promoter", "name": "pBM3R1", "dnasequence": "AATCCGCGTGATAGGTCTGATTCGTTACCAATTGACGGAATGAACGTTCATTCCGATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBM3R1/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ57", "dnasequence": "CTGAAGAAGTCAATTAATGTGCTTTTAATTCTGATGAGTCGGTGACGACGAAACTTCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ57/1" }, { "collection": "parts", "type": "rbs", "name": "E1", "dnasequence": "CCCCCCGAGGAGTAGCAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/E1/1" }, { "collection": "parts", "type": "cds", "name": "BetI", "dnasequence": "ATGCCGAAACTGGGTATGCAGAGCATTCGTCGTCGTCAGCTGATTGATGCAACCCTGGAAGCAATTAATGAAGTTGGTATGCATGATGCAACCATTGCACAGATTGCACGTCGTGCCGGTGTTAGCACCGGTATTATTAGCCATTATTTCCGCGATAAAAACGGTCTGCTGGAAGCAACCATGCGTGATATTACCAGCCAGCTGCGTGATGCAGTTCTGAATCGTCTGCATGCACTGCCGCAGGGTAGCGCAGAACAGCGTCTGCAGGCAATTGTTGGTGGTAATTTTGATGAAACCCAGGTTAGCAGCGCAGCAATGAAAGCATGGCTGGCATTTTGGGCAAGCAGCATGCATCAGCCGATGCTGTATCGTCTGCAGCAGGTTAGCAGTCGTCGTCTGCTGAGCAATCTGGTTAGCGAATTTCGTCGTGAACTGCCTCGTGAACAGGCACAAGAGGCAGGTTATGGTCTGGCAGCACTGATTGATGGTCTGTGGCTGCGTGCAGCACTGAGCGGTAAACCGCTGGATAAAACCCGTGCAAATAGCCTGACCCGTCATTTTATCACCCAGCATCTGCCGACCGATTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BetI/1" }, { "collection": "parts", "type": "terminator", "name": "L3S3P11", "dnasequence": "CCAATTATTGAACACCCTTCGGGGTGTTTTTTTGTTTCTGGTCTACC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S3P11/1" }, { "collection": "parts", "type": "promoter", "name": "pBetI", "dnasequence": "AGCGCGGGTGAGAGGGATTCGTTACCAATTGACAATTGATTGGACGTTCAATATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBetI/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ54", "dnasequence": "CTGAAGGGGTCAGTTGATGTGCTTTCAACTCTGATGAGTCAGTGATGACGAAACCCCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ54/1" }, { "collection": "parts", "type": "rbs", "name": "F1", "dnasequence": "CTATGGACTATGTTTTCACATACGAGGGGGATTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/F1/1" }, { "collection": "parts", "type": "cds", "name": "AmeR", "dnasequence": "ATGAACAAAACCATTGATCAGGTGCGTAAAGGTGATCGTAAAAGCGATCTGCCGGTTCGTCGTCGTCCGCGTCGTAGTGCCGAAGAAACCCGTCGTGATATTCTGGCAAAAGCCGAAGAACTGTTTCGTGAACGTGGTTTTAATGCAGTTGCCATTGCAGATATTGCAAGCGCACTGAATATGAGTCCGGCAAATGTGTTTAAACATTTTAGCAGCAAAAACGCACTGGTTGATGCAATTGGTTTTGGTCAGATTGGTGTTTTTGAACGTCAGATTTGTCCGCTGGATAAAAGCCATGCACCGCTGGATCGTCTGCGTCATCTGGCACGTAATCTGATGGAACAGCATCATCAGGATCATTTCAAACACATACGGGTTTTTATTCAGATCCTGATGACCGCCAAACAGGATATGAAATGTGGCGATTATTACAAAAGCGTGATTGCAAAACTGCTGGCCGAAATTATTCGTGATGGTGTTGAAGCAGGTCTGTATATTGCAACCGATATTCCGGTTCTGGCAGAAACCGTTCTGCATGCACTGACCAGCGTTATTCATCCGGTTCTGATTGCACAAGAAGATATTGGTAATCTGGCAACCCGTTGTGATCAGCTGGTTGATCTGATTGATGCAGGTCTGCGTAATCCGCTGGCAAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AmeR/1" }, { "collection": "parts", "type": "terminator", "name": "L3S3P31", "dnasequence": "CCAATTATTGAACACCCTAACGGGTGTTTTTTTTTTTTTGGTCTACC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S3P31/1" }, { "collection": "parts", "type": "promoter", "name": "pAmeR", "dnasequence": "TCGTCACTAGAGGGCGATAGTGACAAACTTGACAACTCATCACTTCCTAGGTATAATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pAmeR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ51", "dnasequence": "CTGAAGTAGTCACCGGCTGTGCTTGCCGGTCTGATGAGCCTGTGAAGGCGAAACTACCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ51/1" }, { "collection": "parts", "type": "rbs", "name": "H1", "dnasequence": "ACCCCCGAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/H1/1" }, { "collection": "parts", "type": "cds", "name": "HlyIIR", "dnasequence": "ATGAAATACATCCTGTTTGAGGTGTGCGAAATGGGTAAAAGCCGTGAACAGACCATGGAAAATATTCTGAAAGCAGCCAAAAAGAAATTCGGCGAACGTGGTTATGAAGGCACCAGCATTCAAGAAATTACCAAAGAAGCCAAAGTTAACGTTGCAATGGCCAGCTATTACTTTAATGGCAAAGAGAACCTGTACTACGAGGTGTTCAAAAAATACGGTCTGGCAAATGAACTGCCGAACTTTCTGGAAAAAAACCAGTTTAATCCGATTAATGCCCTGCGTGAATATCTGACCGTTTTTACCACCCACATTAAAGAAAATCCGGAAATTGGCACCCTGGCCTATGAAGAAATTATCAAAGAAAGCGCACGCCTGGAAAAAATCAAACCGTATTTTATCGGCAGCTTCGAACAGCTGAAAGAAATTCTGCAAGAGGGTGAAAAACAGGGTGTGTTTCACTTTTTTAGCATCAACCATACCATCCATTGGATTACCAGCATTGTTCTGTTTCCGAAATTCAAAAAATTCATCGATAGCCTGGGTCCGAATGAAACCAATGATACCAATCATGAATGGATGCCGGAAGATCTGGTTAGCCGTATTATTAGCGCACTGACCGATAAACCGAACATTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/HlyIIR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120033736", "dnasequence": "aacgcatgagAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTtttattgcgc", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120033736/1" }, { "collection": "parts", "type": "promoter", "name": "pHlyIIR", "dnasequence": "ACCAGGAATCTGAACGATTCGTTACCAATTGACATATTTAAAATTCTTGTTTAAAatgctagc", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pHlyIIR/1" }, { "collection": "parts", "type": "ribozyme", "name": "ElvJ", "dnasequence": "CTGAagCCCCATAGGGTGGTGTGTACCACCCCTGATGAGTCCAAAAGGACGAAATGGGGcctctacaaataattttgtttaa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ElvJ/1" }, { "collection": "parts", "type": "rbs", "name": "I1", "dnasequence": "ATTGCTATGGACTATGTTTCAAAGTGAGAATACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/I1/1" }, { "collection": "parts", "type": "cds", "name": "IcaRA", "dnasequence": "GTGAAAGACAAAATTATCGATAACGCCATCACCCTGTTTAGCGAAAAAGGTTATGACGGCACCACCCTGGATGATATTGCAAAAAGCGTGAACATCAAAAAAGCCAGCCTGTATTATCACTTTGATAGCAAAAAAAGCATCTACGAGCAGAGCGTTAAATGCTGTTTCGATTATCTGAACAACATCATCATGATGAACCAGAACAAAAGCAACTATAGCATCGATGCCCTGTATCAGTTTCTGTTTGAGTTCATCTTCGATATCGAGGAACGCTATATTCGTATGTATGTTCAGCTGAGCAACACACCGGAAGAATTTTCAGGTAACATTTATGGCCAGATCCAGGATCTGAATCAGAGCCTGAGCAAAGAAATCGCCAAATTCTATGACGAAAGCAAAATCAAAATGACCAAAGAGGACTTCCAGAATCTGATTCTGCTGTTTCTGGAAAGCTGGTATCTGAAAGCCAGCTTTAGCCAGAAATTTGGTGCAGTTGAAGAAAGCAAAAGCCAGTTTAAAGATGAGGTTTATAGCCTGCTGAACATCTTTCTGAAGAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/IcaRA/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120016170", "dnasequence": "ACAATTTTCGAAAAAACCCGCTTCGGCGGGTTTTTTTATAGCTAAAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120016170/1" }, { "collection": "parts", "type": "promoter", "name": "pIcaRA", "dnasequence": "GTCAACTCATAAGATtctgattcgttaccaattgacaaTTCACCTACCTTTCGTTAGgTTAGGTTGT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pIcaRA/1" }, { "collection": "parts", "type": "ribozyme", "name": "PlmJ", "dnasequence": "CTGAAGTCATAAGTCTGGGCTAAGCCCACTGATGAGTCGCTGAAATGCGACGAAACTTATGACCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/PlmJ/1" }, { "collection": "parts", "type": "rbs", "name": "L1", "dnasequence": "GTCCTATGGACTTTTTCATACAGGAGAACCCTCG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L1/1" }, { "collection": "parts", "type": "cds", "name": "LitR", "dnasequence": "ATGGATACCATTCAGAAACGTCCGCGTACCCGTCTGAGTCCGGAAAAACGTAAAGAACAGCTGCTGGATATTGCCATTGAAGTTTTTAGCCAGCGTGGTATTGGTCGTGGTGGTCATGCAGATATTGCAGAAATTGCACAGGTTAGCGTTGCAACCGTGTTTAACTATTTTCCGACCCGTGAAGATCTGGTTGATGATGTTCTGAACAAAGTGGAAAACGAGTTTCACCAGTTCATCAATAACAGCATTAGCCTGGATCTGGATGTTCGTAGCAATCTGAATACCCTGCTGCTGAACATTATTGATAGCGTTCAGACCGGCAACAAATGGATTAAAGTTTGGTTTGAATGGTCAACCAGCACCCGTGATGAAGTTTGGCCTCTGTTTCTGAGCACCCATAGCAATACCAATCAGGTGATCAAAACCATGTTTGAAGAGGGTATTGAACGCAATGAAGTGTGCAATGATCATACACCGGAAAATCTGACCAAAATGCTGCATGGTATTTGCTATAGCGTGTTTATTCAGGCCAATCGTAATAGCAGCAGCGAAGAAATGGAAGAAACCGCAAATTGCTTTCTGAATATGCTGTGCATCTACAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LitR/1" }, { "collection": "parts", "type": "terminator", "name": "L3S2P24", "dnasequence": "CTCGGTACCAAATTCCAGAAAAGACACCCGAAAGGGTGTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/L3S2P24/1" }, { "collection": "parts", "type": "promoter", "name": "pLitR", "dnasequence": "CGAGCGTAGAGCTTAgattcgttaccaatTGACAAATTTATAAATTGTCAgtacagtcctagc", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pLitR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ64", "dnasequence": "AGGAGTCAATTAATGTGCTTTTAATTCTGATGAGACGGTGACGTCGAAACTCCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ64/1" }, { "collection": "parts", "type": "rbs", "name": "N1", "dnasequence": "TACGCTATGGACTATGTTTTCTGCTATGGACTATGTTTTCACACACGAGATGCCTCG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/N1/1" }, { "collection": "parts", "type": "cds", "name": "LmrA", "dnasequence": "ATGAGCTATGGTGATAGCCGTGAAAAAATTCTGAGCGCAGCAACCCGTCTGTTTCAGCTGCAGGGTTATTATGGCACCGGTCTGAATCAGATTATCAAAGAAAGCGGTGCACCGAAAGGTAGCCTGTATTATCATTTTCCGGGTGGTAAAGAACAGCTGGCAATTGAAGCAGTGAACGAAATGAAAGAATATATCCGCCAGAAAATCGCCGATTGTATGGAAGCATGTACCGATCCGGCAGAAGGTATTCAGGCATTTCTGAAAGAACTGAGCTGTCAGTTTAGCTGTACCGAAGATATTGAAGGTCTGCCGGTTGGTCTGCTGGCAGCAGAAACCAGCCTGAAAAGCGAACCGCTGCGTGAAGCATGTCATGAAGCATATAAAGAATGGGCCAGCGTGTATGAAGAAAAACTGCGTCAGACCGGTTGTAGCGAAAGCCGTGCAAAAGAAGCAAGCACCGTTGTTAATGCAATGATTGAAGGTGGTATTCTGCTGAGCCTGACCGCAAAAAATAGCACACCGCTGCTGCATATTAGCAGCTGTATTCCGGATCTGCTGAAACGTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120010876", "dnasequence": "taaggttgaaAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTgacggtggta", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120010876/1" }, { "collection": "parts", "type": "promoter", "name": "pLmrA", "dnasequence": "CGCTCATTCACTAGGTCTGATTCGTTACCAATTGACAACTGGTGGTCGAATCAAGATAATAGACCAGTCACTATATTT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pLmrA/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ53", "dnasequence": "CTGAAGCGGTCAACGCATGTGCTTTGCGTTCTGATGAGACAGTGATGTCGAAACCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ53/1" }, { "collection": "parts", "type": "rbs", "name": "P1", "dnasequence": "CTATGGACTATGTTTGAAAGGGAGAAATACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/P1/1" }, { "collection": "parts", "type": "cds", "name": "PhlF", "dnasequence": "ATGGCACGTACCCCGAGCCGTAGCAGCATTGGTAGCCTGCGTAGTCCGCATACCCATAAAGCAATTCTGACCAGCACCATTGAAATCCTGAAAGAATGTGGTTATAGCGGTCTGAGCATTGAAAGCGTTGCACGTCGTGCCGGTGCAAGCAAACCGACCATTTATCGTTGGTGGACCAATAAAGCAGCACTGATTGCCGAAGTGTATGAAAATGAAAGCGAACAGGTGCGTAAATTTCCGGATCTGGGTAGCTTTAAAGCCGATCTGGATTTTCTGCTGCGTAATCTGTGGAAAGTTTGGCGTGAAACCATTTGTGGTGAAGCATTTCGTTGTGTTATTGCAGAAGCACAGCTGGACCCTGCAACCCTGACCCAGCTGAAAGATCAGTTTATGGAACGTCGTCGTGAGATGCCGAAAAAACTGGTTGAAAATGCCATTAGCAATGGTGAACTGCCGAAAGATACCAATCGTGAACTGCTGCTGGATATGATTTTTGGTTTTTGTTGGTATCGCCTGCTGACCGAACAGCTGACCGTTGAACAGGATATTGAAGAATTTACCTTCCTGCTGATTAATGGTGTTTGTCCGGGTACACAGCGTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/PhlF/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120033737", "dnasequence": "GGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120033737/1" }, { "collection": "parts", "type": "promoter", "name": "pPhlF", "dnasequence": "CGACGTACGGTGGAATCTGATTCGTTACCAATTGACATGATACGAAACGTACCGTATCGTTAAGGT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pPhlF/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ53", "dnasequence": "CTGAAGCGGTCAACGCATGTGCTTTGCGTTCTGATGAGACAGTGATGTCGAAACCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ53/1" }, { "collection": "parts", "type": "rbs", "name": "P2", "dnasequence": "GGAGCTATGGACTATGTTTGAAAGGCTGAAATACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/P2/1" }, { "collection": "parts", "type": "cds", "name": "PhlF", "dnasequence": "ATGGCACGTACCCCGAGCCGTAGCAGCATTGGTAGCCTGCGTAGTCCGCATACCCATAAAGCAATTCTGACCAGCACCATTGAAATCCTGAAAGAATGTGGTTATAGCGGTCTGAGCATTGAAAGCGTTGCACGTCGTGCCGGTGCAAGCAAACCGACCATTTATCGTTGGTGGACCAATAAAGCAGCACTGATTGCCGAAGTGTATGAAAATGAAAGCGAACAGGTGCGTAAATTTCCGGATCTGGGTAGCTTTAAAGCCGATCTGGATTTTCTGCTGCGTAATCTGTGGAAAGTTTGGCGTGAAACCATTTGTGGTGAAGCATTTCGTTGTGTTATTGCAGAAGCACAGCTGGACCCTGCAACCCTGACCCAGCTGAAAGATCAGTTTATGGAACGTCGTCGTGAGATGCCGAAAAAACTGGTTGAAAATGCCATTAGCAATGGTGAACTGCCGAAAGATACCAATCGTGAACTGCTGCTGGATATGATTTTTGGTTTTTGTTGGTATCGCCTGCTGACCGAACAGCTGACCGTTGAACAGGATATTGAAGAATTTACCTTCCTGCTGATTAATGGTGTTTGTCCGGGTACACAGCGTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/PhlF/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120033737", "dnasequence": "GGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120033737/1" }, { "collection": "parts", "type": "promoter", "name": "pPhlF", "dnasequence": "CGACGTACGGTGGAATCTGATTCGTTACCAATTGACATGATACGAAACGTACCGTATCGTTAAGGT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pPhlF/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ53", "dnasequence": "CTGAAGCGGTCAACGCATGTGCTTTGCGTTCTGATGAGACAGTGATGTCGAAACCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ53/1" }, { "collection": "parts", "type": "rbs", "name": "P3", "dnasequence": "CTTTACGAGGGCGATCCT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/P3/1" }, { "collection": "parts", "type": "cds", "name": "PhlF", "dnasequence": "ATGGCACGTACCCCGAGCCGTAGCAGCATTGGTAGCCTGCGTAGTCCGCATACCCATAAAGCAATTCTGACCAGCACCATTGAAATCCTGAAAGAATGTGGTTATAGCGGTCTGAGCATTGAAAGCGTTGCACGTCGTGCCGGTGCAAGCAAACCGACCATTTATCGTTGGTGGACCAATAAAGCAGCACTGATTGCCGAAGTGTATGAAAATGAAAGCGAACAGGTGCGTAAATTTCCGGATCTGGGTAGCTTTAAAGCCGATCTGGATTTTCTGCTGCGTAATCTGTGGAAAGTTTGGCGTGAAACCATTTGTGGTGAAGCATTTCGTTGTGTTATTGCAGAAGCACAGCTGGACCCTGCAACCCTGACCCAGCTGAAAGATCAGTTTATGGAACGTCGTCGTGAGATGCCGAAAAAACTGGTTGAAAATGCCATTAGCAATGGTGAACTGCCGAAAGATACCAATCGTGAACTGCTGCTGGATATGATTTTTGGTTTTTGTTGGTATCGCCTGCTGACCGAACAGCTGACCGTTGAACAGGATATTGAAGAATTTACCTTCCTGCTGATTAATGGTGTTTGTCCGGGTACACAGCGTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/PhlF/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120033737", "dnasequence": "ggaaacacagAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTcgaccaaagg", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120033737/1" }, { "collection": "parts", "type": "promoter", "name": "pPhlF", "dnasequence": "CGACGTACGGTGGAAtctgattcgttaccaattgacATGATACGAAACGTACCGTATCGTTAAGGT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pPhlF/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ60", "dnasequence": "CTGAAGTCGTCAAGTGCTGTGCTTGCACTTCTGATGAGGCAGTGATGCCGAAACGACCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ60/1" }, { "collection": "parts", "type": "rbs", "name": "Q1", "dnasequence": "GTAAGCCATGCCATTGGCTTTTGATAGAGGATAACTACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/Q1/1" }, { "collection": "parts", "type": "cds", "name": "QacR", "dnasequence": "ATGAACCTGAAAGATAAAATTCTGGGCGTTGCCAAAGAACTGTTTATCAAAAATGGCTATAACGCAACCACCACCGGTGAAATTGTTAAACTGAGCGAAAGCAGCAAAGGCAATCTGTATTATCACTTTAAAACCAAAGAGAACCTGTTTCTGGAAATCCTGAACATCGAAGAAAGCAAATGGCAAGAGCAGTGGAAAAAAGAACAAATCAAATGCAAAACCAACCGCGAGAAATTCTATCTGTATAATGAACTGAGCCTGACCACCGAATATTACTATCCGCTGCAGAATGCCATCATCGAGTTTTATACCGAGTACTATAAAACCAACAGCATCAACGAGAAAATGAACAAACTGGAAAACAAATACATCGATGCCTACCACGTGATCTTTAAAGAAGGTAATCTGAACGGCGAATGGTGCATTAATGATGTTAATGCCGTGAGCAAAATTGCAGCAAATGCCGTTAATGGCATTGTTACCTTTACCCATGAGCAGAATATCAACGAACGCATTAAACTGATGAACAAATTCAGCCAGATCTTTCTGAATGGCCTGAGCAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/QacR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120010818", "dnasequence": "GTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTACTTTTGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120010818/1" }, { "collection": "parts", "type": "promoter", "name": "pQacR", "dnasequence": "GGTATGGAAGCTATACGTTACCAATTGACAGCTAGCTCAGTCCTACTTTAGTATATAGACCGTGCGATCGGTCTATA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pQacR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ60", "dnasequence": "CTGAAGTCGTCAAGTGCTGTGCTTGCACTTCTGATGAGGCAGTGATGCCGAAACGACCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ60/1" }, { "collection": "parts", "type": "rbs", "name": "Q2", "dnasequence": "GCCATGCCATTGGCTTTTGATAGAGGACAACTACTAG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/Q2/1" }, { "collection": "parts", "type": "cds", "name": "QacR", "dnasequence": "ATGAACCTGAAAGATAAAATTCTGGGCGTTGCCAAAGAACTGTTTATCAAAAATGGCTATAACGCAACCACCACCGGTGAAATTGTTAAACTGAGCGAAAGCAGCAAAGGCAATCTGTATTATCACTTTAAAACCAAAGAGAACCTGTTTCTGGAAATCCTGAACATCGAAGAAAGCAAATGGCAAGAGCAGTGGAAAAAAGAACAAATCAAATGCAAAACCAACCGCGAGAAATTCTATCTGTATAATGAACTGAGCCTGACCACCGAATATTACTATCCGCTGCAGAATGCCATCATCGAGTTTTATACCGAGTACTATAAAACCAACAGCATCAACGAGAAAATGAACAAACTGGAAAACAAATACATCGATGCCTACCACGTGATCTTTAAAGAAGGTAATCTGAACGGCGAATGGTGCATTAATGATGTTAATGCCGTGAGCAAAATTGCAGCAAATGCCGTTAATGGCATTGTTACCTTTACCCATGAGCAGAATATCAACGAACGCATTAAACTGATGAACAAATTCAGCCAGATCTTTCTGAATGGCCTGAGCAAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/QacR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120010818", "dnasequence": "GTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTTTTACTTTTGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120010818/1" }, { "collection": "parts", "type": "promoter", "name": "pQacR", "dnasequence": "ggtatggaagctatacgttaccaattgacagctagctcagtccTACTTTAGTATATAGACCGTGCGATCGGTCTATA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pQacR/1" }, { "collection": "parts", "type": "ribozyme", "name": "ScmJ", "dnasequence": "agCGCTGTCTGTACTTGTATCAGTACACTGACGAGTCCCTAAAGGACGAAACACCGcctctacaaataattttgtttaa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ScmJ/1" }, { "collection": "parts", "type": "rbs", "name": "R1", "dnasequence": "TTTAATTCGCGGAAGCGCAGAGATAAGGGGTATC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/R1/1" }, { "collection": "parts", "type": "cds", "name": "PsrA", "dnasequence": "ATGGCACAGAGCGAAACCGTTGAACGTATTCTGGATGCAGCAGAACAGCTGTTTGCAGAACGTGGTTTTGCAGAAACCAGCCTGCGTCTGATTACCAGCAAAGCCGGTGTTAATCTGGCAGCAGTGAATTATCATTTTGGCAGCAAAAAAGCACTGATTCAGGCAGTTTTTAGCCGTTTTCTGGGTCCGTTTTGTGCAAGCCTGGAACGTGAACTGGAACGTCGTCAGGCACGTCCGGAACAGAAACCGAGCCTGGAAGAACTGCTGGAAATGCTGGTTGAACAGGCACTGGCAGTTCAGCCTCGTAGCAATAATGATCTGAGCATTTTTATGTGTCTGCTGGGTCTGGCATTTAGCCAGAGCCAGGGTCATCTGCGTCGTTATCTGGAAGATATGTATGGTAAAGTGTTCCGTCGTTATATGCTGCTGGTTAATGAAGCAGCACCGCGTGTTCCGCCTCTGGAACTGTTTTGGCGTGTTCATTTTATGCTGGGTGCAGCAGCATTTAGCATGAGCGGTATTAAAGCACTGCGTGCAATTGCAGAAACCGATTTTGGTATTAACACCAGCATTGAACAGGTTATGCGTCTGATGGTTCCGTTTCTGGCAGCAGGTATGCGTGCAGATAGCGGTGTTACCGATGAAGCAATGGCAGCAGCACAGCTGCGTCCGCGTAGCAAAACCAGCACCAGCGCAACCACCGCAAAAGCATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/PsrA/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120015440", "dnasequence": "tccggcaattAAAAAAGCGGCTAACCACGCCGCTTTTTTtacgtctgca", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120015440/1" }, { "collection": "parts", "type": "promoter", "name": "pPsrA", "dnasequence": "TGATCGAACGCTTCAAGGAACAAACGTTTGAttgacagctagctcagtcctaggtagagtgctagc", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pPsrA/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ10", "dnasequence": "CTGAAGCGCTCAACGGGTGTGCTTCCCGTTCTGATGAGTCCGTGAGGACGAAAGCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ10/1" }, { "collection": "parts", "type": "rbs", "name": "S1", "dnasequence": "GAGTCTATGGACTATGTTTTCACAGAGGAGGTACCAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/S1/1" }, { "collection": "parts", "type": "cds", "name": "SrpR", "dnasequence": "ATGGCACGTAAAACCGCAGCAGAAGCAGAAGAAACCCGTCAGCGTATTATTGATGCAGCACTGGAAGTTTTTGTTGCACAGGGTGTTAGTGATGCAACCCTGGATCAGATTGCACGTAAAGCCGGTGTTACCCGTGGTGCAGTTTATTGGCATTTTAATGGTAAACTGGAAGTTCTGCAGGCAGTTCTGGCAAGCCGTCAGCATCCGCTGGAACTGGATTTTACACCGGATCTGGGTATTGAACGTAGCTGGGAAGCAGTTGTTGTTGCAATGCTGGATGCAGTTCATAGTCCGCAGAGCAAACAGTTTAGCGAAATTCTGATTTATCAGGGTCTGGATGAAAGCGGTCTGATTCATAATCGTATGGTTCAGGCAAGCGATCGTTTTCTGCAGTATATTCATCAGGTTCTGCGTCATGCAGTTACCCAGGGTGAACTGCCGATTAATCTGGATCTGCAGACCAGCATTGGTGTTTTTAAAGGTCTGATTACCGGTCTGCTGTATGAAGGTCTGCGTAGCAAAGATCAGCAGGCACAGATTATCAAAGTTGCACTGGGTAGCTTTTGGGCACTGCTGCGTGAACCGCCTCGTTTTCTGCTGTGTGAAGAAGCACAGATTAAACAGGTGAAATCCTTCGAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SrpR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120019600", "dnasequence": "TTCAGCCAAAAAACTTAAGACCGCCGGTCTTGTCCACTACCTTGCAGTAATGCGGTGGACAGGATCGGCGGTTTTCTTTTCTCTTCTCAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120019600/1" }, { "collection": "parts", "type": "promoter", "name": "pSrpR", "dnasequence": "TCTATGATTGGTCCAGATTCGTTACCAATTGACAGCTAGCTCAGTCCTAGGTATATACATACATGCTTGTTTGTTTGTAAAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pSrpR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ10", "dnasequence": "CTGAAGCGCTCAACGGGTGTGCTTCCCGTTCTGATGAGTCCGTGAGGACGAAAGCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ10/1" }, { "collection": "parts", "type": "rbs", "name": "S2", "dnasequence": "GAGTCTATGGACTATGTTTTCACATATGAGATACCAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/S2/1" }, { "collection": "parts", "type": "cds", "name": "SrpR", "dnasequence": "ATGGCACGTAAAACCGCAGCAGAAGCAGAAGAAACCCGTCAGCGTATTATTGATGCAGCACTGGAAGTTTTTGTTGCACAGGGTGTTAGTGATGCAACCCTGGATCAGATTGCACGTAAAGCCGGTGTTACCCGTGGTGCAGTTTATTGGCATTTTAATGGTAAACTGGAAGTTCTGCAGGCAGTTCTGGCAAGCCGTCAGCATCCGCTGGAACTGGATTTTACACCGGATCTGGGTATTGAACGTAGCTGGGAAGCAGTTGTTGTTGCAATGCTGGATGCAGTTCATAGTCCGCAGAGCAAACAGTTTAGCGAAATTCTGATTTATCAGGGTCTGGATGAAAGCGGTCTGATTCATAATCGTATGGTTCAGGCAAGCGATCGTTTTCTGCAGTATATTCATCAGGTTCTGCGTCATGCAGTTACCCAGGGTGAACTGCCGATTAATCTGGATCTGCAGACCAGCATTGGTGTTTTTAAAGGTCTGATTACCGGTCTGCTGTATGAAGGTCTGCGTAGCAAAGATCAGCAGGCACAGATTATCAAAGTTGCACTGGGTAGCTTTTGGGCACTGCTGCGTGAACCGCCTCGTTTTCTGCTGTGTGAAGAAGCACAGATTAAACAGGTGAAATCCTTCGAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SrpR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120029600", "dnasequence": "TTCAGCCAAAAAACTTAAGACCGCCGGTCTTGTCCACTACCTTGCAGTAATGCGGTGGACAGGATCGGCGGTTTTCTTTTCTCTTCTCAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120029600/1" }, { "collection": "parts", "type": "promoter", "name": "pSrpR", "dnasequence": "TCTATGATTGGTCCAGATTCGTTACCAATTGACAGCTAGCTCAGTCCTAGGTATATACATACATGCTTGTTTGTTTGTAAAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pSrpR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ10", "dnasequence": "CTGAAGCGCTCAACGGGTGTGCTTCCCGTTCTGATGAGTCCGTGAGGACGAAAGCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ10/1" }, { "collection": "parts", "type": "rbs", "name": "S3", "dnasequence": "GAGTCTATGGACTATGTTTTCACAAAGGAAGTACCAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/S3/1" }, { "collection": "parts", "type": "cds", "name": "SrpR", "dnasequence": "ATGGCACGTAAAACCGCAGCAGAAGCAGAAGAAACCCGTCAGCGTATTATTGATGCAGCACTGGAAGTTTTTGTTGCACAGGGTGTTAGTGATGCAACCCTGGATCAGATTGCACGTAAAGCCGGTGTTACCCGTGGTGCAGTTTATTGGCATTTTAATGGTAAACTGGAAGTTCTGCAGGCAGTTCTGGCAAGCCGTCAGCATCCGCTGGAACTGGATTTTACACCGGATCTGGGTATTGAACGTAGCTGGGAAGCAGTTGTTGTTGCAATGCTGGATGCAGTTCATAGTCCGCAGAGCAAACAGTTTAGCGAAATTCTGATTTATCAGGGTCTGGATGAAAGCGGTCTGATTCATAATCGTATGGTTCAGGCAAGCGATCGTTTTCTGCAGTATATTCATCAGGTTCTGCGTCATGCAGTTACCCAGGGTGAACTGCCGATTAATCTGGATCTGCAGACCAGCATTGGTGTTTTTAAAGGTCTGATTACCGGTCTGCTGTATGAAGGTCTGCGTAGCAAAGATCAGCAGGCACAGATTATCAAAGTTGCACTGGGTAGCTTTTGGGCACTGCTGCGTGAACCGCCTCGTTTTCTGCTGTGTGAAGAAGCACAGATTAAACAGGTGAAATCCTTCGAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SrpR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120029600", "dnasequence": "TTCAGCCAAAAAACTTAAGACCGCCGGTCTTGTCCACTACCTTGCAGTAATGCGGTGGACAGGATCGGCGGTTTTCTTTTCTCTTCTCAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120029600/1" }, { "collection": "parts", "type": "promoter", "name": "pSrpR", "dnasequence": "TCTATGATTGGTCCAGATTCGTTACCAATTGACAGCTAGCTCAGTCCTAGGTATATACATACATGCTTGTTTGTTTGTAAAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pSrpR/1" }, { "collection": "parts", "type": "ribozyme", "name": "RiboJ10", "dnasequence": "CTGAAGCGCTCAACGGGTGTGCTTCCCGTTCTGATGAGTCCGTGAGGACGAAAGCGCCTCTACAAATAATTTTGTTTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RiboJ10/1" }, { "collection": "parts", "type": "rbs", "name": "S4", "dnasequence": "CTATGGACTATGTTTTCACACAGGAAATACCAGG", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/S4/1" }, { "collection": "parts", "type": "cds", "name": "SrpR", "dnasequence": "ATGGCACGTAAAACCGCAGCAGAAGCAGAAGAAACCCGTCAGCGTATTATTGATGCAGCACTGGAAGTTTTTGTTGCACAGGGTGTTAGTGATGCAACCCTGGATCAGATTGCACGTAAAGCCGGTGTTACCCGTGGTGCAGTTTATTGGCATTTTAATGGTAAACTGGAAGTTCTGCAGGCAGTTCTGGCAAGCCGTCAGCATCCGCTGGAACTGGATTTTACACCGGATCTGGGTATTGAACGTAGCTGGGAAGCAGTTGTTGTTGCAATGCTGGATGCAGTTCATAGTCCGCAGAGCAAACAGTTTAGCGAAATTCTGATTTATCAGGGTCTGGATGAAAGCGGTCTGATTCATAATCGTATGGTTCAGGCAAGCGATCGTTTTCTGCAGTATATTCATCAGGTTCTGCGTCATGCAGTTACCCAGGGTGAACTGCCGATTAATCTGGATCTGCAGACCAGCATTGGTGTTTTTAAAGGTCTGATTACCGGTCTGCTGTATGAAGGTCTGCGTAGCAAAGATCAGCAGGCACAGATTATCAAAGTTGCACTGGGTAGCTTTTGGGCACTGCTGCGTGAACCGCCTCGTTTTCTGCTGTGTGAAGAAGCACAGATTAAACAGGTGAAATCCTTCGAATAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/SrpR/1" }, { "collection": "parts", "type": "terminator", "name": "ECK120029600", "dnasequence": "TTCAGCCAAAAAACTTAAGACCGCCGGTCTTGTCCACTACCTTGCAGTAATGCGGTGGACAGGATCGGCGGTTTTCTTTTCTCTTCTCAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/ECK120029600/1" }, { 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gate_LmrA", "gate_PsrA BEFORE gate_HlyIIR", "gate_PsrA BEFORE gate_AmtR", "gate_LmrA BEFORE gate_HlyIIR", "gate_LmrA BEFORE gate_AmtR", "gate_HlyIIR BEFORE gate_AmtR", "ALL_FORWARD" ] }, { "collection": "genetic_locations", "locations": [ { "file": [ "LOCUS pCello_circuit 2419 bp ds-DNA circular 19-MAR-2015", "SOURCE ", " ORGANISM ", "COMMENT ", "COMMENT ", "COMMENT ApEinfo:methylated:1", "FEATURES Location/Qualifiers", " misc_feature complement(450..464)", " /vntifkey=\"21\"", " /label=CAP\\site", " /ApEinfo_fwdcolor=#ff0080", " /ApEinfo_revcolor=#ff0080", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(178..183)", " /vntifkey=\"21\"", " /label=<-- EarI site", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=#ff0000", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " CDS complement(join(127..177,184..195))", " /vntifkey=\"4\"", " /label=LacZ\\alpha", " /ApEinfo_fwdcolor=#6495ed", " /ApEinfo_revcolor=#6495ed", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(480..487)", " /vntifkey=\"21\"", " /label=LacI", " /ApEinfo_fwdcolor=#ff8080", " /ApEinfo_revcolor=#ff8080", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 556..559", " /label=cc", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 548..555", " /vntifkey=\"21\"", " /label=Linker\\2", " /ApEinfo_fwdcolor=#0080ff", " /ApEinfo_revcolor=#00ff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 58..65", " /vntifkey=\"21\"", " /label=Linker\\1", " /ApEinfo_fwdcolor=#0080ff", " /ApEinfo_revcolor=#00ff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(426..431)", " /vntifkey=\"21\"", " /label=pLac\\-35\\box", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=cyan", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(467..487)", " /vntifkey=\"21\"", " /label=LacO3", " /ApEinfo_fwdcolor=#8080ff", " /ApEinfo_revcolor=#8080ff", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(400..429)", " /vntifkey=\"21\"", " /label=3'\\lacI\\KO\\check\\-\\R\\(580bp)", " /ApEinfo_fwdcolor=#0080ff", " /ApEinfo_revcolor=#0080ff", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(402..407)", " /vntifkey=\"21\"", " /label=pLac\\-10\\box", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(477..477)", " /vntifkey=\"21\"", " /label=Center\\LacO3", " /ApEinfo_fwdcolor=#ffff00", " /ApEinfo_revcolor=#ffff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " rep_origin complement(870..870)", " /vntifkey=\"33\"", " /label=origin", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " rep_origin 597..1432", " /vntifkey=\"33\"", " /label=more\\stringent\\p15A", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " CDS complement(1504..2319)", " /vntifkey=\"4\"", " /label=Kanamycin\\phosphotransferase", " /ApEinfo_fwdcolor=pink", " /ApEinfo_revcolor=pink", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " primer_bind 266..283", " /label=M13-fwd", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " primer_bind complement(349..369)", " /label=M13-rev", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " CDS complement(127..195)", " /label=LacZ alpha", " /ApEinfo_fwdcolor=#6495ed", " /ApEinfo_revcolor=#6495ed", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_binding complement(375..397)", " /label=LacO", " /ApEinfo_fwdcolor=#6495ed", " /ApEinfo_revcolor=#6495ed", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(607..634)", " /label=pMJS02 seq R v2", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=cyan", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 154..173", " /label=spacer:lacZ", " /ApEinfo_fwdcolor=#ff8080", " /ApEinfo_revcolor=#ff8080", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(1504..2319)", " /label=KanR", " /ApEinfo_fwdcolor=#ff8080", " /ApEinfo_revcolor=#ff8080", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 597..1432", " /label=p15A", " /ApEinfo_fwdcolor=#ff00ff", " /ApEinfo_revcolor=#ff00ff", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 1..53", " /label=L3S3P21", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=#ff0000", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", "ORIGIN", " 1 CCAATTATTG AAGGCCTCCC TAACGGGGGG CCTTTTTTTG TTTCTGGTCT CCCgcttctg", " 61 tcttctgcac catatgcggt gtgaaatacc gcacagatgc gtaaggagaa aataccgcat", " 121 caggcgccat tcgccattca ggctgcgcaa ctgttgggaa gggcgatcgg tgcgggcctc", " 181 ttcgctatta cgccagctgg cgaaaggggg atgtgctgca aggcgattaa gttgggtaac", " 241 gccagggttt tcccagtcac gacgttgtaa aacgacggcc agtgaattcg agctcggtac", " 301 ccggggatcc tctagagtcg acctgcaggc atgcaagctt ggcgtaatca tggtcatagc", " 361 tgtttcctgt gtgaaattgt tatccgctca caattccaca caacatacga gccggaagca", " 421 taaagtgtaa agcctggggt gcctaatgag tgagctaact cacattaatt gcgttgcgct", " 481 cactgcccgc tttccagtcg ggaaacctgt cgtgccagct gcattaatga atcggccaac", " 541 gcgcggggaa gacagaatgA GGTGCTTCCT CGCTCACTGA CTCGCTGCAC GAGGCAGACC", " 601 TCAGCGCTAG CGGAGTGTAT ACTGGCTTAC TATGTTGGCA CTGATGAGGG TGTCAGTGAA", " 661 GTGCTTCATG TGGCAGGAGA AAAAAGGCTG CACCGGTGCG TCAGCAGAAT ATGTGATACA", " 721 GGATATATTC CGCTTCCTCG CTCACTGACT CGCTACGCTC GGTCGTTCGA CTGCGGCGAG", " 781 CGGAAATGGC TTACGAACGG GGCGGAGATT TCCTGGAAGA TGCCAGGAAG ATACTTAACA", " 841 GGGAAGTGAG AGGGCCGCGG CAAAGCCGTT TTTCCATAGG CTCCGCCCCC CTGACAAGCA", " 901 TCACGAAATC TGACGCTCAA ATCAGTGGTG GCGAAACCCG ACAGGACTAT AAAGATACCA", " 961 GGCGTTTCCC CTGGCGGCTC CCTCGTGCGC TCTCCTGTTC CTGCCTTTCG GTTTACCGGT", " 1021 GTCATTCCGC TGTTATGGCC GCGTTTGTCT CATTCCACGC CTGACACTCA GTTCCGGGTA", " 1081 GGCAGTTCGC TCCAAGCTGG ACTGTATGCA CGAACCCCCC GTTCAGTCCG ACCGCTGCGC", " 1141 CTTATCCGGT AACTATCGTC TTGAGTCCAA CCCGGAAAGA CATGCAAAAG CACCACTGGC", " 1201 AGCAGCCACT GGTAATTGAT TTAGAGGAGT TAGTCTTGAA GTCATGCGCC GGTTAAGGCT", " 1261 AAACTGAAAG GACAAGTTTT GGTGACTGCG CTCCTCCAAG CCAGTTACCT CGGTTCAAAG", " 1321 AGTTGGTAGC TCAGAGAACC TTCGAAAAAC CGCCCTGCAA GGCGGTTTTT TCGTTTTCAG", " 1381 AGCAAGAGAT TACGCGCAGA CCAAAACGAT CTCAAGAAGA TCATCTTATT AAGGGGTCTG", " 1441 ACGCTCAGTG GAACGAAAAA TCAATCTAAA GTATATATGA GTAAACTTGG TCTGACAGTT", " 1501 ACCTTAGAAA AACTCATCGA GCATCAAATG AAACTGCAAT TTATTCATAT CAGGATTATC", " 1561 AATACCATAT TTTTGAAAAA GCCGTTTCTG TAATGAAGGA GAAAACTCAC CGAGGCAGTT", " 1621 CCATAGGATG GCAAGATCCT GGTATCGGTC TGCGATTCCG ACTCGTCCAA CATCAATACA", " 1681 ACCTATTAAT TTCCCCTCGT CAAAAATAAG GTTATCAAGT GAGAAATCAC CATGAGTGAC", " 1741 GACTGAATCC GGTGAGAATG GCAAAAGCTT ATGCATTTCT TTCCAGACTT GTTCAACAGG", " 1801 CCAGCCATTA CGCTCGTCAT CAAAATCACT CGCATCAACC AAACCGTTAT TCATTCGTGA", " 1861 TTGCGCCTGA GCGAGACGAA ATACGCGATC GCTGTTAAAA GGACAATTAC AAACAGGAAT", " 1921 CGAATGCAAC CGGCGCAGGA ACACTGCCAG CGCATCAACA ATATTTTCAC CTGAATCAGG", " 1981 ATATTCTTCT AATACCTGGA ATGCTGTTTT CCCGGGGATC GCAGTGGTGA GTAACCATGC", " 2041 ATCATCAGGA GTACGGATAA AATGCTTGAT GGTCGGAAGA GGCATAAATT CCGTCAGCCA", " 2101 GTTTAGTCTG ACCATCTCAT CTGTAACATC ATTGGCAACG CTACCTTTGC CATGTTTCAG", " 2161 AAACAACTCT GGCGCATCGG GCTTCCCATA CAATCGATAG ATTGTCGCAC CTGATTGCCC", " 2221 GACATTATCG CGAGCCCATT TATACCCATA TAAATCAGCA TCCATGTTGG AATTTAATCG", " 2281 CGGCCTCGAG CAAGACGTTT CCCGTTGAAT ATGGCTCATA ACACCCCTTG TATTACTGTT", " 2341 TATGTAAGCA GACAGTTTTA TTGTTCATGA TGATATATTT TTATCTTGTG CAATGTACAT", " 2401 CAGAGATTTT GAGACACAA ", "//" ], "name": "pAN1201" }, { "file": [ "LOCUS pCello_output 3363 bp ds-DNA linear 19-MAR-2015", "DEFINITION .", "ACCESSION ", "VERSION ", "SOURCE .", " ORGANISM .", "COMMENT ", "COMMENT ", "COMMENT ApEinfo:methylated:1", "FEATURES Location/Qualifiers", " misc_feature complement(957..973)", " /label=VR", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3132..3146", " /label=beta-lactamase (ampR; rev)", " /ApEinfo_fwdcolor=#8080ff", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3141..3146", " /label=HindIII", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3244..3267", " /label=pMB1 rev", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3298..3320", " /label=AG_s29 rev", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 1058..3094", " /label=pSC101", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 872..891", " /label=Primer AG14 VF2", " /ApEinfo_fwdcolor=#ff8040", " /ApEinfo_revcolor=#00ff00", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " Part 1..792", " /label=tac-377", " /ApEinfo_fwdcolor=#41507E", " /ApEinfo_revcolor=#767061", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 352..371", " /label=1658", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 1..792", " /label=Strep Resistance", " /ApEinfo_fwdcolor=#ff80ff", " /ApEinfo_revcolor=#ff80ff", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 253..292", " /label=seam", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 762..781", " /label=strep forward", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(1532..1542)", " /label=DR5", " /ApEinfo_fwdcolor=#0000ff", " /ApEinfo_revcolor=#0000ff", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3250..3257", " /label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 793..798", " /label=SCAR(1)", " /ApEinfo_label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 3250..3255", " /label=SCAR(2)", " /ApEinfo_label=SCAR", " /ApEinfo_fwdcolor=#c0c0c0", " /ApEinfo_revcolor=#c0c0c0", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature complement(957..976)", " /label=VR(1)", " /ApEinfo_label=VR", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=cyan", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 872..891", " /label=VF2", " /ApEinfo_fwdcolor=cyan", " /ApEinfo_revcolor=green", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", " misc_feature 892..948", " /label=L3S2P44", " /ApEinfo_fwdcolor=#ff0000", " /ApEinfo_revcolor=#ff0000", " /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0}", " width 5 offset 0", "ORIGIN", " 1 atgagggaag cggtgatcgc cgaagtatcg actcaactat cagaggtagt tggcgtcatc", " 61 gagcgccatc tcgaaccgac gttgctggcc gtacatttgt acggctccgc agtggatggc", " 121 ggcctgaagc cacacagtga tattgatttg ctggttacgg tgaccgtaag gcttgatgaa", " 181 acaacgcggc gagctttgat caacgacctt ttggaaactt cggcttcccc tggagagagc", " 241 gagattctcc gcgctgtaga agtcaccatt gttgtgcacg acgacatcat tccgtggcgt", " 301 tatccagcta agcgcgaact gcaatttgga gaatggcagc gcaatgacat tcttgcaggt", " 361 atcttcgagc cagccacgat cgacattgat ctggctatct tgctgacaaa agcaagagaa", " 421 catagcgttg ccttggtagg tccagcggcg gaggaactct ttgatccggt tcctgaacag", " 481 gatctatttg aggcgctaaa tgaaacctta acgctatgga actcgccgcc cgactgggct", " 541 ggcgatgagc gaaatgtagt gcttacgttg tcccgcattt ggtacagcgc agtaaccggc", " 601 aaaatcgcgc cgaaggatgt cgctgccgac tgggcaatgg agcgcctgcc ggcccagtat", " 661 cagcccgtca tacttgaagc tagacaggct tatcttggac aagaagaaga tcgcttggcc", " 721 tcgcgcgcag atcagttgga agaatttgtc cactacgtga aaggcgagat caccaaggta", " 781 gtcggcaaat aatactagct ccggcaaaaa aacgggcaag gtgtcaccac cctgcccttt", " 841 ttctttaaaa ccgaaaagat tacttcgcgt ttgccacctg acgtctaaga aCTCGGTACC", " 901 AAACCAATTA TTGAAGACGC TGAAAAGCGT CTTTTTTTGT TTCGGTCCGC TTAATGgctc", " 961 actcaaaggc ggtaatacgg ttatccacag aatcagggga taacgcagga aagaacatgt", " 1021 gagcaaaagg ccagcaaaag gccaggaacc gtaaaaactg tcagaccaag tttacgagct", " 1081 cgcttggact cctgttgata gatccagtaa tgacctcaga actccatctg gatttgttca", " 1141 gaacgctcgg ttgccgccgg gcgtttttta ttggtgagaa tccaagcact agggacagta", " 1201 agacgggtaa gcctgttgat gataccgctg ccttactggg tgcattagcc agtctgaatg", " 1261 acctgtcacg ggataatccg aagtggtcag actggaaaat cagagggcag gaactgctga", " 1321 acagcaaaaa gtcagatagc accacatagc agacccgcca taaaacgccc tgagaagccc", " 1381 gtgacgggct tttcttgtat tatgggtagt ttccttgcat gaatccataa aaggcgcctg", " 1441 tagtgccatt tacccccatt cactgccaga gccgtgagcg cagcgaactg aatgtcacga", " 1501 aaaagacagc gactcaggtg cctgatggtc ggagacaaaa ggaatattca gcgatttgcc", " 1561 cgagcttgcg agggtgctac ttaagccttt agggttttaa ggtctgtttt gtagaggagc", " 1621 aaacagcgtt tgcgacatcc ttttgtaata ctgcggaact gactaaagta gtgagttata", " 1681 cacagggctg ggatctattc tttttatctt tttttattct ttctttattc tataaattat", " 1741 aaccacttga atataaacaa aaaaaacaca caaaggtcta gcggaattta cagagggtct", " 1801 agcagaattt acaagttttc cagcaaaggt ctagcagaat ttacagatac ccacaactca", " 1861 aaggaaaagg acatgtaatt atcattgact agcccatctc aattggtata gtgattaaaa", " 1921 tcacctagac caattgagat gtatgtctga attagttgtt ttcaaagcaa atgaactagc", " 1981 gattagtcgc tatgacttaa cggagcatga aaccaagcta attttatgct gtgtggcact", " 2041 actcaacccc acgattgaaa accctacaag gaaagaacgg acggtatcgt tcacttataa", " 2101 ccaatacgct cagatgatga acatcagtag ggaaaatgct tatggtgtat tagctaaagc", " 2161 aaccagagag ctgatgacga gaactgtgga aatcaggaat cctttggtta aaggctttga", " 2221 gattttccag tggacaaact atgccaagtt ctcaagcgaa aaattagaat tagtttttag", " 2281 tgaagagata ttgccttatc ttttccagtt aaaaaaattc ataaaatata atctggaaca", " 2341 tgttaagtct tttgaaaaca aatactctat gaggatttat gagtggttat taaaagaact", " 2401 aacacaaaag aaaactcaca aggcaaatat agagattagc cttgatgaat ttaagttcat", " 2461 gttaatgctt gaaaataact accatgagtt taaaaggctt aaccaatggg ttttgaaacc", " 2521 aataagtaaa gatttaaaca cttacagcaa tatgaaattg gtggttgata agcgaggccg", " 2581 cccgactgat acgttgattt tccaagttga actagataga caaatggatc tcgtaaccga", " 2641 acttgagaac aaccagataa aaatgaatgg tgacaaaata ccaacaacca ttacatcaga", " 2701 ttcctaccta cgtaacggac taagaaaaac actacacgat gctttaactg caaaaattca", " 2761 gctcaccagt tttgaggcaa aatttttgag tgacatgcaa agtaagcatg atctcaatgg", " 2821 ttcgttctca tggctcacgc aaaaacaacg aaccacacta gagaacatac tggctaaata", " 2881 cggaaggatc tgaggttctt atggctcttg tatctatcag tgaagcatca agactaacaa", " 2941 acaaaagtag aacaactgtt caccgttaga tatcaaaggg aaaactgtcc atatgcacag", " 3001 atgaaaacgg tgtaaaaaag atagatacat cagagctttt acgagttttt ggtgcattta", " 3061 aagctgttca ccatgaacag atcgacaatg taacgattat caaaaaggat cttcacctag", " 3121 atccttttaa attaaaaatg aagcttcgtt gtgtctcaaa atctctgatg ttacattgca", " 3181 caagataaaa atatatcatc atgaacaata aaactgtctg cttacataaa cagtaataca", " 3241 aggggtgttt actagaggtt gatcgggcac gtaagaggtt ccaactttca ccataatgaa", " 3301 ataagatcac taccgggcgt attttttgag ttatcgagat tttcaggagc taaggaagct", " 3361 aaa ", "//" ], "name": "pAN4020" } ], "sensor_module_location": [ { "location_name": "pAN1201", "bp_start": 560, "bp_end": 560 } ], "circuit_module_location": [ { "location_name": "pAN1201", "bp_start": 54, "bp_end": 560 } ], "output_module_location": [ { "location_name": "pAN4020", "bp_start": 953, "unit_conversion": 0.4, "bp_end": 953 } ] }, { "collection": "containers", "name": "plasmid1", "type": "plasmid", "gate_type": "INPUT,PRIMARY_INPUT", "backbone": "backbone" }, { "collection": "containers", "name": "plasmid2", "type": "plasmid", "gate_type": "OUTPUT,PRIMARY_OUTPUT", "backbone": "backbone" }, { "collection": "containers", "name": "plasmid3", "type": "plasmid", "gate_type": "NOT,NOR", "backbone": "backbone" }, { "collection": "parts", "type": "cds", "name": "LacI", "dnasequence": "atgaaaccagtaacgttatacgatgtcgcagagtatgccggtgtctcttatcagaccgtttcccgcgtggtgaaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggcgatggcggagctgaattacattcccaaccgcgtggcacaacaactggcgggcaaacagtcgttgctgattggcgttgccacctccagtctggccctgcacgcgccgtcgcaaattgtcgcggcgattaaatctcgcgccgatcaactgggtgccagcgtggtggtgtcgatggtagaacgaagcggcgtcgaagcctgtaaagcggcggtgcacaatcttctcgcgcaacgcgtcagtgggctgatcattaactatccgctggatgaccaggatgccattgctgtggaagctgcctgcactaatgttccggcgttatttcttgatgtctctgaccagacacccatcaacagtattattttctcccatgaggacggtacgcgactgggcgtggagcatctggtcgcattgggtcaccagcaaatcgcgctgttagcgggcccattaagttctgtctcggcgcgtctgcgtctggctggctggcataaatatctcactcgcaatcaaattcagccgatagcggaacgggaaggcgactggagtgccatgtccggttttcaacaaaccatgcaaatgctgaatgagggcatcgttcccactgcgatgctggttgccaacgatcagatggcgctgggcgcaatgcgcgccattaccgagtccgggctgcgcgttggtgcggatatctcggtagtgggatacgacgataccgaagatagctcatgttatatcccgccgttaaccaccatcaaacaggattttcgcctgctggggcaaaccagcgtggaccgcttgctgcaactctctcagggccaggcggtgaagggcaatcagctgttgccagtctcactggtgaaaagaaaaaccaccctggcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgataa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LacI/1" }, { "collection": "parts", "type": "cds", "name": "TetR", "dnasequence": "atgtccagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgaggtcggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagcctacattgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgttagataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttacgtaataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtacatttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagcctttttatgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcattttactttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaacacctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcaccaaggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaacaacttaaatgtgaaagtgggtcctaa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/TetR/1" }, { "collection": "parts", "type": "cds", "name": "AraC", "dnasequence": "atggctgaagcgcaaaatgatcccctgctgccgggatactcgtttaatgcccatctggtggcgggtttaacgccgattgaggccaacggttatctcgatttttttatcgaccgaccgctgggaatgaaaggttatattctcaatctcaccattcgcggtcagggggtggtgaaaaatcagggacgagaatttgtttgccgaccgggtgatattttgctgttcccgccaggagagattcatcactacggtcgtcatccggaggctcgcgaatggtatcaccagtgggtttactttcgtccgcgcgcctactggcatgaatggcttaactggccgtcaatatttgccaatacggggttctttcgcccggatgaagcgcaccagccgcatttcagcgacctgtttgggcaaatcattaacgccgggcaaggggaagggcgctattcggagctgctggcgataaatctgcttgagcaattgttactgcggcgcatggaagcgattaacgagtcgctccatccaccgatggataatcgggtacgcgaggcttgtcagtacatcagcgatcacctggcagacagcaattttgatatcgccagcgtcgcacagcatgtttgcttgtcgccgtcgcgtctgtcacatcttttccgccagcagttagggattagcgtcttaagctggcgcgaggaccaacgtatcagccaggcgaagctgcttttgagcaccacccggatgcctatcgccaccgtcggtcgcaatgttggttttgacgatcaactctatttctcgcgggtatttaaaaaatgcaccggggccagcccgagcgagttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataa", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/AraC/1" }, { "collection": "parts", "type": "cds", "name": "LuxR", "dnasequence": "ATGAACATTAAAAATATAAATGCTAATGAGAAGATAATTGATAAAATTAAAACTTGTAATAATAATAAAGATATTAATCAATGTTTATCTGAAATAGCAAAGATAATACATTGTGAATATTACCTATTCGCTATTATCTATCCTCACTCAATAATTAAACCTGATGTTTCAATTATAGATAATTACCCTGAAAAATGGCGTAAATATTATGATGATGCCGGACTACTAGAATATGACCCTGTAGTCGATTACTCTAAGTCCCATCATTCACCAATTAATTGGAACGTATTCGAAAAAAAAACAATAAAAAAAGAGTCTCCGAATGTAATAAAAGAAGCACAGGAATCGGGACTCATTACTGGATTTAGCTTTCCAATTCATACTGCAAGTAATGGTTTTGGAATGCTCAGTTTTGCTCATTCAGATAAAGATATTTATACTGACAGTTTATTTTTACACGCTAGTACAAATGTACCATTAATGCTTCCTTCTTTAGTCGATAATTATCAAAAAATAAATACGACACGTAAAAAGTCAGATTCTATTTTAACAAAAAGAGAAAAAGAATGCTTAGCGTGGGCGAGTGAAGGAAAAAGTACATGGGATATTTCAAAAATACTTGGCTGCAGTGAGCGTACTGTCACTTTTCATTTAACCAATACTCAAATGAAACTCAATACAACTAACCGCTGCCAAAGTATTTCTAAAGCAATTTTAACTGGCGCCATTAATTGTCCATACCTTAAAAATTAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LuxR/1" }, { "collection": "parts", "type": "promoter", "name": "pCONST", "dnasequence": "GATAAGTCCCTAACTTTTACAGCTAGCTCAGTCCTAGGTATTATGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pCONST/1" }, { "collection": "parts", "type": "promoter", "name": "pTac", "dnasequence": "AACGATCGTTGGCTGTGTTGACAATTAATCATCGGCTCGTATAATGTGTGGAATTGTGAGCGCTCACAATT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pTac/1" }, { "collection": "parts", "type": "promoter", "name": "pTet", "dnasequence": "TACTCCACCGTTGGCTTTTTTCCCTATCAGTGATAGAGATTGACATCCCTATCAGTGATAGAGATAATGAGCAC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pTet/1" }, { "collection": "parts", "type": "promoter", "name": "pBAD", "dnasequence": "ACTTTTCATACTCCCGCCATTCAGAGAAGAAACCAATTGTCCATATTGCATCAGACATTGCCGTCACTGCGTCTTTTACTGGCTCTTCTCGCTAACCAAACCGGTAACCCCGCTTATTAAAAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACTTTGCTATGCCATAGCATTTTTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGGCTAGC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pBAD/1" }, { "collection": "parts", "type": "promoter", "name": "pLuxStar", "dnasequence": "ATAGCTTCTTACCGGACCTGTAGGATCGTACAGGTTTACGCAAGAAAATGGTTTGTTACTTTCGAATAAA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/pLuxStar/1" }, { "collection": "parts", "type": "cds", "name": "YFP", "dnasequence": "CTGAAGCTGTCACCGGATGTGCTTTCCGGTCTGATGAGTCCGTGAGGACGAAACAGCCTCTACAAATAATTTTGTTTAATACTAGAGAAAGAGGGGAAATACTAGATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACAGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCTTCGGCTACGGCCTGCAATGCTTCGCCCGCTACCCCGACCACATGAAGCTGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCAATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTTAGCTACCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAACTCGGTACCAAATTCCAGAAAAGAGGCCTCCCGAAAGGGGGGCCTTTTTTCGTTTTGGTCC", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/YFP/1" }, { "collection": "parts", "type": "cds", "name": "RFP", "dnasequence": "CTGAAGTGGTCGTGATCTGAAACTCGATCACCTGATGAGCTCAAGGCAGAGCGAAACCACCTCTACAAATAATTTTGTTTAATACTAGAGTCACACAGGAAAGTACTAGATGGCTTCCTCCGAAGACGTTATCAAAGAGTTCATGCGTTTCAAAGTTCGTATGGAAGGTTCCGTTAACGGTCACGAGTTCGAAATCGAAGGTGAAGGTGAAGGTCGTCCGTACGAAGGTACCCAGACCGCTAAACTGAAAGTTACCAAAGGTGGTCCGCTGCCGTTCGCTTGGGACATCCTGTCCCCGCAGTTCCAGTACGGTTCCAAAGCTTACGTTAAACACCCGGCTGACATCCCGGACTACCTGAAACTGTCCTTCCCGGAAGGTTTCAAATGGGAACGTGTTATGAACTTCGAAGACGGTGGTGTTGTTACCGTTACCCAGGACTCCTCCCTGCAAGACGGTGAGTTCATCTACAAAGTTAAACTGCGTGGTACCAACTTCCCGTCCGACGGTCCGGTTATGCAGAAAAAAACCATGGGTTGGGAAGCTTCCACCGAACGTATGTACCCGGAAGACGGTGCTCTGAAAGGTGAAATCAAAATGCGTCTGAAACTGAAAGACGGTGGTCACTACGACGCTGAAGTTAAAACCACCTACATGGCTAAAAAACCGGTTCAGCTGCCGGGTGCTTACAAAACCGACATCAAACTGGACATCACCTCCCACAACGAAGACTACACCATCGTTGAACAGTACGAACGTGCTGAAGGTCGTCACTCCACCGGTGCTTAATAACAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCT", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/RFP/1" }, { "collection": "parts", "type": "cds", "name": "BFP", "dnasequence": "CTGAAGTTCCAGTCGAGACCTGAAGTGGGTTTCCTGATGAGGCTGTGGAGAGAGCGAAAGCTTTACTCCCGCACAAGCCGAAACTGGAACCTCTACAAATAATTTTGTTTAAGAGTCACACAGGAAAGTACTAGATGAGCGAGCTGATTAAGGAGAACATGCACATGAAGCTGTACATGGAGGGCACCGTGGACAACCATCACTTCAAGTGCACATCCGAGGGCGAAGGCAAGCCCTACGAGGGCACCCAGACCATGAGAATCAAGGTGGTCGAGGGCGGCCCTCTCCCCTTCGCCTTCGACATCCTGGCTACTAGCTTCCTCTACGGCAGCAAGACCTTCATCAACCACACCCAGGGCATCCCCGACTTCTTCAAGCAGTCCTTCCCTGAGGGCTTCACATGGGAGAGAGTCACCACATACGAAGATGGGGGCGTGCTGACCGCTACCCAGGACACCAGCCTCCAGGACGGCTGCCTCATCTACAACGTCAAGATCAGAGGGGTGAACTTCACATCCAACGGCCCTGTGATGCAGAAGAAAACACTCGGCTGGGAGGCCTTCACCGAGACGCTGTACCCCGCTGACGGCGGCCTGGAAGGCAGAAACGACATGGCCCTGAAGCTCGTGGGCGGGAGCCATCTGATCGCAAACATCAAGACCACATATAGATCCAAGAAACCCGCTAAGAACCTCAAGATGCCTGGCGTCTACTATGTGGACTACAGACTGGAAAGAATCAAGGAGGCCAACAACGAGACCTACGTCGAGCAGCACGAGGTGGCAGTGGCCAGATACTGCGACCTCCCTAGCAAACTGGGGCACTAACCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTCACACTGGCTCACCTTCGGGTGGGCCTTTCTGCGTTTATA", "uri": "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/BFP/1" }, { "collection": "parts", "type": "cds", "name": "sigmaK1FR", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGACGCGCTTGAACCTGAGGTTCCTCGGTTCGTTCAACCTCCAGCCGACCGTCAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaT3", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGAAGCGCCTGGACATGATTTTCTTGGGTCAATTTCGCTTGCAACCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaT7", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGAGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTCAGACGCGCTTGAACCTGATGTTCCTCGGTCAGTTCCGCTTACAGCCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACACAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" }, { "collection": "parts", "type": "cds", "name": "sigmaCGG", "dnasequence": "ATGAGCATCGCGGCGACCCTGGAGAACGATCTGGCGCGTCTGGAAAACGAAAACGCTCGTCTCGAAAAAGACATCGCGAACCTGGAACGTGACCTGGCGAAACTGGAGCGTGAAGAAGCGTACTTCGGAGGTTCAGGTGGTAAGAACACTGGTGAAATCTCTGAGAAAGTCAAGCTGGGCACTAAGGCACTGGCTGGTCAATGGCTGGCTTACGGTGTTACTCGCAGTGTGACTAAGCGTTCAGTCATGACGCTGGCTTACGGGTCCAAAGAGTTCGGCTTCCGTCAACAAGTGCTGGAAGATACCATTCAGCCAGCTATTGATTCCGGCAAGGGTCTGATGTTCACTCAGCCGAATCAGGCTGCTGGATACATGGCTAAGCTGATTTGGGAATCTGTGAGCGTGACGGTGGTAGCTGCGGTTGAAGCAATGAACTGGCTTAAGTCTGCTGCTAAGCTGCTGGCTGCTGAGGTCAAAGATAAGAAGACTGGAGAGATTCTTCGCAAGCGTTGCGCTGTGCATTGGGTAACTCCTGATGGTTTCCCTGTGTGGCAGGAATACAAGAAGCCTATTAAAACGCGCGTGCATATTATGTTCCTCGGTCAGTTCGAAATGCAGCCTACCATTAACACCAACAAAGATAGCGAGATTGATGCACGCAAACAGGAGTCTGGTATCGCTCCTAACTTTGTACACAGCCAAGACGGTAGCCACCTTCGTAAGACTGTAGTGTGGGCACACGAGAAGTACGGAATCGAATCTTTTGCACTGATTCACGACTCCTTCGGTACGATTCCGGCTGACGCTGCGAACCTGTTCAAAGCAGTGCGCGAAACTATGGTTGACACATATGAGTCTTGTGATGTACTGGCTGATTTCTACGACCAGTTCGCTGACCAGTTGCACGAGTCTCAATTGGACAAAATGCCAGCACTTCCGGCTAAAGGTAACTTGAACCTCCGTGACATCTTAGAGTCGGACTTCGCGTTCGCG" } ]